Turning off clang formatting around the program option declarations.
clang-format makes them looks bad an unreadable because it thinks the
options are function calls or something.
- Also removes all references to boost/cstdint.hpp and replaces it with
stdint.h (The 'correct' replacement would be <cstdint>, but not all of our
compilers support that).
- GPIO on UART connector all board Revs
- Consolidated fpgpio_bitbang into fpgpio example and renamed it gpio
- Changed FP_GPIO readback address to match X300