Matt 7f9b7b3f0e Add ESMFold (#19977) ... * initial commit * First draft that gets outputs without crashing! * Add all the ported openfold dependencies * testing * Restructure config files for ESMFold * Debugging to find output discrepancies * Mainly style * Make model runnable without extra deps * Remove utils and merge them to the modeling file * Use correct gelu and remove some debug prints * More cleanup * Update esm docs * Update conversion script to support ESMFold properly * Port some top-level changes from ESMFold repo * Expand EsmFold docstrings * Make attention_mask optional (default to all 1s) * Add inference test for ESMFold * Use config and not n kwargs * Add modeling output class * Remove einops * Remove chunking in ESM FFN * Update tests for ESMFold * Quality * REpo consistency * Remove tree dependency from ESMFold * make fixup * Add an error in case my structure map function breaks later * Remove needless code * Stop auto-casting the LM to float16 so CPU tests pass * Stop auto-casting the LM to float16 so CPU tests pass * Final test updates * Split test file * Copyright and quality * Unpin PyTorch to see built doc * Fix config file to_dict() method * Add some docstrings to the output * Skip TF checkpoint tests for ESM until we reupload those * make fixup * More docstrings * Unpin to get even with main * Flag example to write Co-authored-by: Sylvain Gugger <Sylvain.gugger@gmail.com>		2022-10-31 21:32:58 -04:00
..
test_module	Custom pipeline (#18079)	2022-07-19 12:02:35 +02:00
tf_ops	Check TF ops for ONNX compliance (#10025)	2021-02-15 07:55:10 -05:00
check_config_docstrings.py	Create dummy models (#19901)	2022-10-28 13:05:41 +02:00
check_copies.py	Improve check copies (#19829)	2022-10-24 11:24:18 -04:00
check_doc_toc.py	Split model list on modality (#18328)	2022-08-01 11:10:20 -05:00
check_dummies.py	Add some tests for check_dummies (#19146)	2022-09-21 14:54:09 -04:00
check_inits.py	Add ESMFold (#19977)	2022-10-31 21:32:58 -04:00
check_repo.py	Add ESMFold (#19977)	2022-10-31 21:32:58 -04:00
check_self_hosted_runner.py	Add offline runners info in the Slack report (#19169)	2022-09-23 19:23:05 +02:00
check_table.py	Fix some typos. (#17560)	2022-07-11 05:00:13 -04:00
check_tf_ops.py	Check TF ops for ONNX compliance (#10025)	2021-02-15 07:55:10 -05:00
create_dummy_models.py	Create dummy models (#19901)	2022-10-28 13:05:41 +02:00
custom_init_isort.py	explicitly set utf8 for Windows (#17664)	2022-06-13 08:05:45 -04:00
documentation_tests.txt	[Doctest] Add configuration_deberta.py (#19968)	2022-10-31 17:22:01 +01:00
download_glue_data.py	Raise exceptions instead of asserts (#13907)	2021-10-07 12:44:23 +05:30
get_ci_error_statistics.py	Update Past CI report script (#19228)	2022-09-29 19:22:23 +02:00
get_github_job_time.py	add a script to get time info. from GA workflow jobs (#18822)	2022-09-01 12:02:52 +02:00
get_modified_files.py	Updates the default branch from master to main (#16326)	2022-03-23 03:46:59 -04:00
notification_service.py	Add offline runners info in the Slack report (#19169)	2022-09-23 19:23:05 +02:00
notification_service_doc_tests.py	fix missing block when there is no failure (#18775)	2022-08-29 09:10:13 +02:00
past_ci_versions.py	Add PyTorch 1.11 to past CI (#18302)	2022-07-26 15:47:23 +02:00
prepare_for_doc_test.py	Add a check regarding the number of occurrences of ``` (#18389)	2022-08-01 14:23:02 +02:00
print_env.py	Print more library versions in CI (#17384)	2022-06-02 10:24:16 +02:00
release.py	Clean README in post release job as well. (#17519)	2022-06-02 07:44:03 -04:00
sort_auto_mappings.py	Automatically sort auto mappings (#17250)	2022-05-16 13:24:20 -04:00
tests_fetcher.py	Remove debug statement	2022-10-18 13:58:09 -04:00
update_metadata.py	Add depth estimation pipeline (#18618)	2022-10-12 08:54:20 -04:00