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Clémentine Fourrier 87208a05af
Graphormer model for Graph Classification (#20968) 
* [FT] First commit for graphormer architecture.

The model has no tokenizer, as it uses a collator and preprocessing function for its input management.
Architecture to be tested against original one.
The arch might need to be changed to fit the checkpoint, but a revert to the original arch will make the code less nice to read.
TODO: doc

* [FIX] removed test model

* [FIX] import error

* [FIX] black and flake

* [DOC] added paper refs

* [FIX] [DOC]

* [FIX] black

* [DOC] Updated READMEs

* [FIX] Order of imports + rm Tokenizer calls

* [FIX] Moved assert in class to prevent doc build failure

* [FIX] make fix-copies

* [Doc] update from code review

Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* [FIX] Removed Graphormer from Sequence classification model list

* [DOC] Added HF copyright to Cython file

* [DOC] Fixed comments

* [FIX] typos in class doc + removed config classes.

Todo: update doc from paper definitions

* [FIX] Removed dependency to fairseq, and replaced all asserts with Exception management

* [FIX] Homogeneized initialization of weights to pretrained constructor

* [FIX] [CP] Updated multi_hop parameter to get same results as in original implementation

* [DOC] Relevant parameter description in the configuration file

* [DOC] Updated doc and comments in main graphormer file

* [FIX] make style and quality checks

* [DOC] Fix doc format

* [FIX] [WIP] Updated part of the tests, though still a wip

* [FIX] [WIP]

* [FIX] repo consistency

* [FIX] Changed input names for more understandability

* [FIX] [BUG] updated num_classes params for propagation in the model

* simplified collator

* [FIX] Updated tests to follow new naming pattern

* [TESTS] Updated test suite along with model

* |FIX] rm tokenizer import

* [DOC] add link to graphormerdoc

* Changed section in doc from text model to graph model

* Apply suggestions from code review

Spacing, inits

Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* [DOC] Explain algos_graphormer functions

* Cython soft import protection

* Rm call to Callable in configuration graphormer

* [FIX] replaced asserts with Exceptions

* Add org to graphormer checkpoints

* Prefixed classes with Graphormer

* Management of init functions

* format

* fixes

* fix length file

* update indent

* relaunching ci

* Errors for missing cython imports

* fix style

* fix style doc

Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
2023-01-19 13:05:59 -05:00
..
albert.mdx
altclip.mdx Add AltCLIP (#20446) 2023-01-04 09:18:57 +01:00
audio-spectrogram-transformer.mdx Add resources (#20872) 2023-01-17 17:42:33 +01:00
auto.mdx Add Universal Segmentation class + mapping (#20766) 2022-12-16 14:22:46 +01:00
bart.mdx Add TFBartForSequenceClassification (#20570) 2022-12-07 18:05:39 +01:00
barthez.mdx
bartpho.mdx
beit.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
bert-generation.mdx
bert-japanese.mdx
bert.mdx Add BERT resources (#19852) 2022-11-01 11:09:53 -07:00
bertweet.mdx
big_bird.mdx Update documentation on seq2seq models with absolute positional embeddings, to be in line with Tips section for BERT and GPT2 (#20068) 2022-11-04 11:32:44 -04:00
bigbird_pegasus.mdx Update documentation on seq2seq models with absolute positional embeddings, to be in line with Tips section for BERT and GPT2 (#20068) 2022-11-04 11:32:44 -04:00
biogpt.mdx Add BioGPT (#20420) 2022-12-05 10:12:03 -05:00
bit.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
blenderbot-small.mdx Update documentation on seq2seq models with absolute positional embeddings, to be in line with Tips section for BERT and GPT2 (#20068) 2022-11-04 11:32:44 -04:00
blenderbot.mdx Update documentation on seq2seq models with absolute positional embeddings, to be in line with Tips section for BERT and GPT2 (#20068) 2022-11-04 11:32:44 -04:00
blip.mdx blip support for training (#21021) 2023-01-18 11:24:37 +01:00
bloom.mdx docs: Resolve many typos in the English docs (#20088) 2022-11-07 09:19:04 -05:00
bort.mdx
byt5.mdx
camembert.mdx
canine.mdx
chinese_clip.mdx Add Chinese-CLIP implementation (#20368) 2022-11-30 19:22:23 +01:00
clip.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
clipseg.mdx [CLIPSeg] Add resources (#20118) 2022-11-09 18:31:22 +01:00
codegen.mdx Add CodeGen model (#17443) 2022-06-24 17:10:38 +02:00
conditional_detr.mdx Add segmentation + object detection image processors (#20160) 2022-11-30 10:24:03 +00:00
convbert.mdx
convnext.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
cpm.mdx
ctrl.mdx
cvt.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
data2vec.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
deberta-v2.mdx
deberta.mdx Add to DeBERTa resources (#20155) 2022-11-15 13:26:07 -05:00
decision_transformer.mdx
deformable_detr.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
deit.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
detr.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
dialogpt.mdx
dinat.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
distilbert.mdx add resources for distilbert (#19930) 2022-10-28 13:16:07 -07:00
dit.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
donut.mdx Add Donut image processor (#20425) 2022-11-29 10:38:01 +00:00
dpr.mdx
dpt.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
electra.mdx
encoder-decoder.mdx [EncoderDecoder] Improve docs (#18271) 2022-07-27 10:08:59 +02:00
ernie.mdx add task_type_id to BERT to support ERNIE-2.0 and ERNIE-3.0 models (#18686) 2022-09-09 07:36:46 -04:00
esm.mdx Add ESMFold (#19977) 2022-10-31 21:32:58 -04:00
flan-t5.mdx Update flan-t5 original model link (#20897) 2022-12-27 02:26:14 -05:00
flaubert.mdx
flava.mdx AutoImageProcessor (#20111) 2022-11-08 19:54:41 +00:00
fnet.mdx
fsmt.mdx
funnel.mdx
git.mdx Add resources (#20872) 2023-01-17 17:42:33 +01:00
glpn.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
gpt-sw3.mdx Add gpt-sw3 model to transformers (#20209) 2022-12-12 13:12:13 -05:00
gpt2.mdx add in layer gpt2 tokenizer (#20421) 2022-11-29 10:02:40 -05:00
gpt_neo.mdx
gpt_neox.mdx
gpt_neox_japanese.mdx Add support for Japanese GPT-NeoX-based model by ABEJA, Inc. (#18814) 2022-09-14 10:17:40 -04:00
gptj.mdx Generate: move generation_*.py src files into generation/*.py (#20096) 2022-11-09 15:34:08 +00:00
graphormer.mdx Graphormer model for Graph Classification (#20968) 2023-01-19 13:05:59 -05:00
groupvit.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
herbert.mdx
hubert.mdx
ibert.mdx
imagegpt.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
jukebox.mdx Add Jukebox model (replaces #16875) (#17826) 2022-11-10 21:05:27 +01:00
layoutlm.mdx [LayoutLM] Add clarification to docs (#18716) 2022-09-02 14:48:19 +02:00
layoutlmv2.mdx AutoImageProcessor (#20111) 2022-11-08 19:54:41 +00:00
layoutlmv3.mdx AutoImageProcessor (#20111) 2022-11-08 19:54:41 +00:00
layoutxlm.mdx
led.mdx Update documentation on seq2seq models with absolute positional embeddings, to be in line with Tips section for BERT and GPT2 (#20068) 2022-11-04 11:32:44 -04:00
levit.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
lilt.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
longformer.mdx docs: Resolve many typos in the English docs (#20088) 2022-11-07 09:19:04 -05:00
longt5.mdx Update longt5.mdx (#18634) 2022-08-16 10:20:46 -05:00
luke.mdx Adding fine-tuning models to LUKE (#18353) 2022-08-01 11:09:47 -04:00
lxmert.mdx
m2m_100.mdx Fix m2m_100.mdx doc example missing labels (#19149) 2022-09-29 13:27:58 +02:00
marian.mdx Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
markuplm.mdx Fix doctest for MarkupLM (#19845) 2022-10-24 17:54:23 +02:00
mask2former.mdx Add resources (#20872) 2023-01-17 17:42:33 +01:00
maskformer.mdx Add Mask2Former (#20792) 2023-01-16 20:37:07 +03:00
mbart.mdx Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
mctct.mdx [Past CI] 🔥 Leave Past CI failures in the past 🔥 (#20861) 2022-12-27 18:37:25 +01:00
megatron-bert.mdx
megatron_gpt2.mdx
mluke.mdx
mobilebert.mdx
mobilenet_v1.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
mobilenet_v2.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
mobilevit.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
mpnet.mdx
mt5.mdx docs: Resolve many typos in the English docs (#20088) 2022-11-07 09:19:04 -05:00
mvp.mdx Add MVP model (#17787) 2022-06-29 09:30:55 -04:00
nat.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
nezha.mdx Nezha Pytorch implementation (#17776) 2022-06-23 12:36:22 -04:00
nllb.mdx Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
nystromformer.mdx
oneformer.mdx Add OneFormer Model (#20577) 2023-01-19 09:31:07 +01:00
openai-gpt.mdx Very small edit to change name to OpenAI GPT (#20722) 2022-12-12 09:43:43 -05:00
opt.mdx Add OPTForQuestionAnswering (#19402) 2022-10-10 09:30:59 -04:00
owlvit.mdx Improve OWL-ViT postprocessing (#20980) 2023-01-03 19:25:09 +03:00
pegasus.mdx
pegasus_x.mdx PEGASUS-X (#18551) 2022-09-02 19:54:02 +02:00
perceiver.mdx AutoImageProcessor (#20111) 2022-11-08 19:54:41 +00:00
phobert.mdx
plbart.mdx Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
poolformer.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
prophetnet.mdx Update documentation on seq2seq models with absolute positional embeddings, to be in line with Tips section for BERT and GPT2 (#20068) 2022-11-04 11:32:44 -04:00
qdqbert.mdx
rag.mdx
realm.mdx
reformer.mdx
regnet.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
rembert.mdx
resnet.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
retribert.mdx
roberta-prelayernorm.mdx Implement Roberta PreLayerNorm (#20305) 2022-12-19 09:30:17 +01:00
roberta.mdx Add RoBERTa resources (#19911) 2022-10-27 11:33:15 -07:00
roc_bert.mdx Add RocBert (#20013) 2022-11-08 10:03:43 -05:00
roformer.mdx
segformer.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
sew-d.mdx
sew.mdx
speech-encoder-decoder.mdx Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
speech_to_text.mdx Fix some doctests after PR 15775 (#20036) 2022-11-03 14:18:45 +01:00
speech_to_text_2.mdx Generate: move generation_*.py src files into generation/*.py (#20096) 2022-11-09 15:34:08 +00:00
splinter.mdx docs: Resolve many typos in the English docs (#20088) 2022-11-07 09:19:04 -05:00
squeezebert.mdx
swin.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
swin2sr.mdx Add Swin2SR (#19784) 2022-12-16 16:24:01 +01:00
swinv2.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
switch_transformers.mdx Add Switch transformers (#19323) 2022-11-15 13:06:45 +01:00
t5.mdx Generate: move generation_*.py src files into generation/*.py (#20096) 2022-11-09 15:34:08 +00:00
t5v1.1.mdx docs: Resolve many typos in the English docs (#20088) 2022-11-07 09:19:04 -05:00
table-transformer.mdx Update doc examples feature extractor -> image processor (#20501) 2022-11-30 14:50:55 +00:00
tapas.mdx Fix tapas scatter (#20149) 2022-11-14 01:04:26 -05:00
tapex.mdx
time_series_transformer.mdx time series forecasting model (#17965) 2022-09-30 15:32:59 -04:00
timesformer.mdx [New Model] Add TimeSformer model (#18908) 2022-12-02 09:13:25 +01:00
trajectory_transformer.mdx
transfo-xl.mdx
trocr.mdx Update doc examples feature extractor -> image processor (#20501) 2022-11-30 14:50:55 +00:00
ul2.mdx
unispeech-sat.mdx
unispeech.mdx
upernet.mdx Add resources (#20872) 2023-01-17 17:42:33 +01:00
van.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
videomae.mdx Update doc examples feature extractor -> image processor (#20501) 2022-11-30 14:50:55 +00:00
vilt.mdx AutoImageProcessor (#20111) 2022-11-08 19:54:41 +00:00
vision-encoder-decoder.mdx Update doc examples feature extractor -> image processor (#20501) 2022-11-30 14:50:55 +00:00
vision-text-dual-encoder.mdx docs: Resolve many typos in the English docs (#20088) 2022-11-07 09:19:04 -05:00
visual_bert.mdx Update doc examples feature extractor -> image processor (#20501) 2022-11-30 14:50:55 +00:00
vit.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
vit_hybrid.mdx Add BiT + ViT hybrid (#20550) 2022-12-07 11:03:39 +01:00
vit_mae.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
vit_msn.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
wav2vec2-conformer.mdx
wav2vec2.mdx Add wav2vec2 resources (#19931) 2022-10-28 13:28:18 -07:00
wav2vec2_phoneme.mdx
wavlm.mdx
whisper.mdx Generate: move generation_*.py src files into generation/*.py (#20096) 2022-11-09 15:34:08 +00:00
xclip.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
xglm.mdx Add TF implementation of XGLMModel (#16543) 2022-08-24 10:51:05 +01:00
xlm-prophetnet.mdx
xlm-roberta-xl.mdx
xlm-roberta.mdx Remove Roberta Dependencies from XLM Roberta Flax and Tensorflow models (#21047) 2023-01-18 07:49:39 -05:00
xlm.mdx
xlnet.mdx
xls_r.mdx
xlsr_wav2vec2.mdx
yolos.mdx Add batch of resources (#20647) 2023-01-17 17:18:56 +01:00
yoso.mdx