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coherence sweep: no private paths in public docs; dead /paper/v0.2 links repointed to git history; leaf-index numbering (doc-only)

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TRUSTED-BASE.md
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@ -237,7 +237,7 @@ running Rust code. Everything else is machine-checked.
**The kernel re-elaborates nothing in such a run.** What it establishes is
that the gates accept artifacts produced earlier — useful while developing a
gate, worthless as a record. `formal-verification-control/tools/record-run.py`
gate, worthless as a record. an operator-internal recording gate (in the private infrastructure repo)
enforces that: it refuses to archive any transcript bearing the audit-only
markers, and also any transcript without a terminal success banner, any
containing `error:`, and any repository whose tree is dirty at record time.