prophet/python/fbprophet/forecaster.py
2017-05-03 17:06:20 -07:00

1097 lines
40 KiB
Python

# Copyright (c) 2017-present, Facebook, Inc.
# All rights reserved.
#
# This source code is licensed under the BSD-style license found in the
# LICENSE file in the root directory of this source tree. An additional grant
# of patent rights can be found in the PATENTS file in the same directory.
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from collections import defaultdict
from datetime import timedelta
from matplotlib import pyplot as plt
from matplotlib.dates import MonthLocator, num2date
from matplotlib.ticker import FuncFormatter
import numpy as np
import pandas as pd
# fb-block 1 start
from fbprophet.models import prophet_stan_models
# fb-block 1 end
try:
import pystan
except ImportError:
print('You cannot run prophet without pystan installed')
raise
# fb-block 2
class Prophet(object):
"""Prophet forecaster.
Parameters
----------
growth: String 'linear' or 'logistic' to specify a linear or logistic
trend.
changepoints: List of dates at which to include potential changepoints. If
not specified, potential changepoints are selected automatically.
n_changepoints: Number of potential changepoints to include. Not used
if input `changepoints` is supplied. If `changepoints` is not supplied,
then n.changepoints potential changepoints are selected uniformly from
the first 80 percent of the history.
yearly_seasonality: Fit yearly seasonality. Can be 'auto', True, or False.
weekly_seasonality: Fit weekly seasonality. Can be 'auto', True, or False.
holidays: pd.DataFrame with columns holiday (string) and ds (date type)
and optionally columns lower_window and upper_window which specify a
range of days around the date to be included as holidays.
lower_window=-2 will include 2 days prior to the date as holidays.
seasonality_prior_scale: Parameter modulating the strength of the
seasonality model. Larger values allow the model to fit larger seasonal
fluctuations, smaller values dampen the seasonality.
holidays_prior_scale: Parameter modulating the strength of the holiday
components model.
changepoint_prior_scale: Parameter modulating the flexibility of the
automatic changepoint selection. Large values will allow many
changepoints, small values will allow few changepoints.
mcmc_samples: Integer, if greater than 0, will do full Bayesian inference
with the specified number of MCMC samples. If 0, will do MAP
estimation.
interval_width: Float, width of the uncertainty intervals provided
for the forecast. If mcmc_samples=0, this will be only the uncertainty
in the trend using the MAP estimate of the extrapolated generative
model. If mcmc.samples>0, this will be integrated over all model
parameters, which will include uncertainty in seasonality.
uncertainty_samples: Number of simulated draws used to estimate
uncertainty intervals.
"""
def __init__(
self,
growth='linear',
changepoints=None,
n_changepoints=25,
yearly_seasonality='auto',
weekly_seasonality='auto',
holidays=None,
seasonality_prior_scale=10.0,
holidays_prior_scale=10.0,
changepoint_prior_scale=0.05,
mcmc_samples=0,
interval_width=0.80,
uncertainty_samples=1000,
):
self.growth = growth
self.changepoints = pd.to_datetime(changepoints)
if self.changepoints is not None:
self.n_changepoints = len(self.changepoints)
else:
self.n_changepoints = n_changepoints
self.yearly_seasonality = yearly_seasonality
self.weekly_seasonality = weekly_seasonality
if holidays is not None:
if not (
isinstance(holidays, pd.DataFrame)
and 'ds' in holidays
and 'holiday' in holidays
):
raise ValueError("holidays must be a DataFrame with 'ds' and "
"'holiday' columns.")
holidays['ds'] = pd.to_datetime(holidays['ds'])
self.holidays = holidays
self.seasonality_prior_scale = float(seasonality_prior_scale)
self.changepoint_prior_scale = float(changepoint_prior_scale)
self.holidays_prior_scale = float(holidays_prior_scale)
self.mcmc_samples = mcmc_samples
self.interval_width = interval_width
self.uncertainty_samples = uncertainty_samples
# Set during fitting
self.start = None
self.y_scale = None
self.t_scale = None
self.changepoints_t = None
self.stan_fit = None
self.params = {}
self.history = None
self.history_dates = None
self.validate_inputs()
def validate_inputs(self):
"""Validates the inputs to Prophet."""
if self.growth not in ('linear', 'logistic'):
raise ValueError(
"Parameter 'growth' should be 'linear' or 'logistic'.")
if self.holidays is not None:
has_lower = 'lower_window' in self.holidays
has_upper = 'upper_window' in self.holidays
if has_lower + has_upper == 1:
raise ValueError('Holidays must have both lower_window and ' +
'upper_window, or neither')
if has_lower:
if max(self.holidays['lower_window']) > 0:
raise ValueError('Holiday lower_window should be <= 0')
if min(self.holidays['upper_window']) < 0:
raise ValueError('Holiday upper_window should be >= 0')
for h in self.holidays['holiday'].unique():
if '_delim_' in h:
raise ValueError('Holiday name cannot contain "_delim_"')
if h in ['zeros', 'yearly', 'weekly', 'yhat', 'seasonal',
'trend']:
raise ValueError('Holiday name {} reserved.'.format(h))
def setup_dataframe(self, df, initialize_scales=False):
"""Prepare dataframe for fitting or predicting.
Adds a time index and scales y. Creates auxillary columns 't', 't_ix',
'y_scaled', and 'cap_scaled'. These columns are used during both
fitting and predicting.
Parameters
----------
df: pd.DataFrame with columns ds, y, and cap if logistic growth.
initialize_scales: Boolean set scaling factors in self from df.
Returns
-------
pd.DataFrame prepared for fitting or predicting.
"""
if 'y' in df:
df['y'] = pd.to_numeric(df['y'])
df['ds'] = pd.to_datetime(df['ds'])
df = df.sort_values('ds')
df.reset_index(inplace=True, drop=True)
if initialize_scales:
self.y_scale = df['y'].max()
self.start = df['ds'].min()
self.t_scale = df['ds'].max() - self.start
df['t'] = (df['ds'] - self.start) / self.t_scale
if 'y' in df:
df['y_scaled'] = df['y'] / self.y_scale
if self.growth == 'logistic':
assert 'cap' in df
df['cap_scaled'] = df['cap'] / self.y_scale
return df
def set_changepoints(self):
"""Set changepoints
Sets m$changepoints to the dates of changepoints. Either:
1) The changepoints were passed in explicitly.
A) They are empty.
B) They are not empty, and need validation.
2) We are generating a grid of them.
3) The user prefers no changepoints be used.
"""
if self.changepoints is not None:
if len(self.changepoints) == 0:
pass
else:
too_low = min(self.changepoints) < self.history['ds'].min()
too_high = max(self.changepoints) > self.history['ds'].max()
if too_low or too_high:
raise ValueError('Changepoints must fall within training data.')
elif self.n_changepoints > 0:
# Place potential changepoints evenly throuh first 80% of history
max_ix = np.floor(self.history.shape[0] * 0.8)
cp_indexes = (
np.linspace(0, max_ix, self.n_changepoints + 1)
.round()
.astype(np.int)
)
self.changepoints = self.history.ix[cp_indexes]['ds'].tail(-1)
else:
# set empty changepoints
self.changepoints = []
if len(self.changepoints) > 0:
self.changepoints_t = np.sort(np.array(
(self.changepoints - self.start) / self.t_scale))
else:
self.changepoints_t = np.array([0]) # dummy changepoint
def get_changepoint_matrix(self):
"""Gets changepoint matrix for history dataframe."""
A = np.zeros((self.history.shape[0], len(self.changepoints_t)))
for i, t_i in enumerate(self.changepoints_t):
A[self.history['t'].values >= t_i, i] = 1
return A
@staticmethod
def fourier_series(dates, period, series_order):
"""Provides Fourier series components with the specified frequency
and order.
Parameters
----------
dates: pd.Series containing timestamps.
period: Number of days of the period.
series_order: Number of components.
Returns
-------
Matrix with seasonality features.
"""
# convert to days since epoch
t = np.array(
(dates - pd.datetime(1970, 1, 1))
.dt.days
.astype(np.float)
)
return np.column_stack([
fun((2.0 * (i + 1) * np.pi * t / period))
for i in range(series_order)
for fun in (np.sin, np.cos)
])
@classmethod
def make_seasonality_features(cls, dates, period, series_order, prefix):
"""Data frame with seasonality features.
Parameters
----------
cls: Prophet class.
dates: pd.Series containing timestamps.
period: Number of days of the period.
series_order: Number of components.
prefix: Column name prefix.
Returns
-------
pd.DataFrame with seasonality features.
"""
features = cls.fourier_series(dates, period, series_order)
columns = [
'{}_delim_{}'.format(prefix, i + 1)
for i in range(features.shape[1])
]
return pd.DataFrame(features, columns=columns)
def make_holiday_features(self, dates):
"""Construct a dataframe of holiday features.
Parameters
----------
dates: pd.Series containing timestamps used for computing seasonality.
Returns
-------
pd.DataFrame with a column for each holiday.
"""
# A smaller prior scale will shrink holiday estimates more
scale_ratio = self.holidays_prior_scale / self.seasonality_prior_scale
# Holds columns of our future matrix.
expanded_holidays = defaultdict(lambda: np.zeros(dates.shape[0]))
# Makes an index so we can perform `get_loc` below.
row_index = pd.DatetimeIndex(dates)
for _ix, row in self.holidays.iterrows():
dt = row.ds.date()
try:
lw = int(row.get('lower_window', 0))
uw = int(row.get('upper_window', 0))
except ValueError:
lw = 0
uw = 0
for offset in range(lw, uw + 1):
occurrence = dt + timedelta(days=offset)
try:
loc = row_index.get_loc(occurrence)
except KeyError:
loc = None
key = '{}_delim_{}{}'.format(
row.holiday,
'+' if offset >= 0 else '-',
abs(offset)
)
if loc is not None:
expanded_holidays[key][loc] = scale_ratio
else:
# Access key to generate value
expanded_holidays[key]
# This relies pretty importantly on pandas keeping the columns in order.
return pd.DataFrame(expanded_holidays)
def make_all_seasonality_features(self, df):
"""Dataframe with seasonality features.
Parameters
----------
df: pd.DataFrame with dates for computing seasonality features.
Returns
-------
pd.DataFrame with seasonality.
"""
seasonal_features = [
# Add a column of zeros in case no seasonality is used.
pd.DataFrame({'zeros': np.zeros(df.shape[0])})
]
# Seasonality features
if self.yearly_seasonality:
seasonal_features.append(self.make_seasonality_features(
df['ds'],
365.25,
10,
'yearly',
))
if self.weekly_seasonality:
seasonal_features.append(self.make_seasonality_features(
df['ds'],
7,
3,
'weekly',
))
if self.holidays is not None:
seasonal_features.append(self.make_holiday_features(df['ds']))
return pd.concat(seasonal_features, axis=1)
def set_auto_seasonalities(self):
"""Set seasonalities that were left on auto.
Turns on yearly seasonality if there is >=2 years of history.
Turns on weekly seasonality if there is >=2 weeks of history, and the
spacing between dates in the history is <7 days.
"""
first = self.history['ds'].min()
last = self.history['ds'].max()
if self.yearly_seasonality == 'auto':
if last - first < pd.Timedelta(days=730):
self.yearly_seasonality = False
print('Disabling yearly seasonality. Run prophet with '
'yearly_seasonality=True to override this.')
else:
self.yearly_seasonality = True
if self.weekly_seasonality == 'auto':
dt = self.history['ds'].diff()
min_dt = dt.iloc[dt.nonzero()[0]].min()
if ((last - first < pd.Timedelta(weeks=2)) or
(min_dt >= pd.Timedelta(weeks=1))):
self.weekly_seasonality = False
print('Disabling weekly seasonality. Run prophet with '
'weekly_seasonality=True to override this.')
else:
self.weekly_seasonality = True
@staticmethod
def linear_growth_init(df):
"""Initialize linear growth.
Provides a strong initialization for linear growth by calculating the
growth and offset parameters that pass the function through the first
and last points in the time series.
Parameters
----------
df: pd.DataFrame with columns ds (date), y_scaled (scaled time series),
and t (scaled time).
Returns
-------
A tuple (k, m) with the rate (k) and offset (m) of the linear growth
function.
"""
i0, i1 = df['ds'].idxmin(), df['ds'].idxmax()
T = df['t'].ix[i1] - df['t'].ix[i0]
k = (df['y_scaled'].ix[i1] - df['y_scaled'].ix[i0]) / T
m = df['y_scaled'].ix[i0] - k * df['t'].ix[i0]
return (k, m)
@staticmethod
def logistic_growth_init(df):
"""Initialize logistic growth.
Provides a strong initialization for logistic growth by calculating the
growth and offset parameters that pass the function through the first
and last points in the time series.
Parameters
----------
df: pd.DataFrame with columns ds (date), cap_scaled (scaled capacity),
y_scaled (scaled time series), and t (scaled time).
Returns
-------
A tuple (k, m) with the rate (k) and offset (m) of the logistic growth
function.
"""
i0, i1 = df['ds'].idxmin(), df['ds'].idxmax()
T = df['t'].ix[i1] - df['t'].ix[i0]
# Force valid values, in case y > cap.
r0 = max(1.01, df['cap_scaled'].ix[i0] / df['y_scaled'].ix[i0])
r1 = max(1.01, df['cap_scaled'].ix[i1] / df['y_scaled'].ix[i1])
if abs(r0 - r1) <= 0.01:
r0 = 1.05 * r0
L0 = np.log(r0 - 1)
L1 = np.log(r1 - 1)
# Initialize the offset
m = L0 * T / (L0 - L1)
# And the rate
k = L0 / m
return (k, m)
# fb-block 7
def fit(self, df, **kwargs):
"""Fit the Prophet model.
This sets self.params to contain the fitted model parameters. It is a
dictionary parameter names as keys and the following items:
k (Mx1 array): M posterior samples of the initial slope.
m (Mx1 array): The initial intercept.
delta (MxN array): The slope change at each of N changepoints.
beta (MxK matrix): Coefficients for K seasonality features.
sigma_obs (Mx1 array): Noise level.
Note that M=1 if MAP estimation.
Parameters
----------
df: pd.DataFrame containing the history. Must have columns ds (date
type) and y, the time series. If self.growth is 'logistic', then
df must also have a column cap that specifies the capacity at
each ds.
kwargs: Additional arguments passed to the optimizing or sampling
functions in Stan.
Returns
-------
The fitted Prophet object.
"""
if self.history is not None:
raise Exception('Prophet object can only be fit once. '
'Instantiate a new object.')
history = df[df['y'].notnull()].copy()
self.history_dates = pd.to_datetime(df['ds']).sort_values()
history = self.setup_dataframe(history, initialize_scales=True)
self.history = history
self.set_auto_seasonalities()
seasonal_features = self.make_all_seasonality_features(history)
self.set_changepoints()
A = self.get_changepoint_matrix()
dat = {
'T': history.shape[0],
'K': seasonal_features.shape[1],
'S': len(self.changepoints_t),
'y': history['y_scaled'],
't': history['t'],
'A': A,
't_change': self.changepoints_t,
'X': seasonal_features,
'sigma': self.seasonality_prior_scale,
'tau': self.changepoint_prior_scale,
}
if self.growth == 'linear':
kinit = self.linear_growth_init(history)
else:
dat['cap'] = history['cap_scaled']
kinit = self.logistic_growth_init(history)
model = prophet_stan_models[self.growth]
def stan_init():
return {
'k': kinit[0],
'm': kinit[1],
'delta': np.zeros(len(self.changepoints_t)),
'beta': np.zeros(seasonal_features.shape[1]),
'sigma_obs': 1,
}
if self.mcmc_samples > 0:
stan_fit = model.sampling(
dat,
init=stan_init,
iter=self.mcmc_samples,
**kwargs
)
for par in stan_fit.model_pars:
self.params[par] = stan_fit[par]
else:
params = model.optimizing(dat, init=stan_init, iter=1e4, **kwargs)
for par in params:
self.params[par] = params[par].reshape((1, -1))
# If no changepoints were requested, replace delta with 0s
if len(self.changepoints) == 0:
# Fold delta into the base rate k
self.params['k'] = self.params['k'] + self.params['delta']
self.params['delta'] = np.zeros(self.params['delta'].shape)
return self
# fb-block 8
def predict(self, df=None):
"""Predict using the prophet model.
Parameters
----------
df: pd.DataFrame with dates for predictions (column ds), and capacity
(column cap) if logistic growth. If not provided, predictions are
made on the history.
Returns
-------
A pd.DataFrame with the forecast components.
"""
if df is None:
df = self.history.copy()
else:
df = self.setup_dataframe(df)
df['trend'] = self.predict_trend(df)
seasonal_components = self.predict_seasonal_components(df)
intervals = self.predict_uncertainty(df)
df2 = pd.concat((df, intervals, seasonal_components), axis=1)
df2['yhat'] = df2['trend'] + df2['seasonal']
return df2
@staticmethod
def piecewise_linear(t, deltas, k, m, changepoint_ts):
"""Evaluate the piecewise linear function.
Parameters
----------
t: np.array of times on which the function is evaluated.
deltas: np.array of rate changes at each changepoint.
k: Float initial rate.
m: Float initial offset.
changepoint_ts: np.array of changepoint times.
Returns
-------
Vector y(t).
"""
# Intercept changes
gammas = -changepoint_ts * deltas
# Get cumulative slope and intercept at each t
k_t = k * np.ones_like(t)
m_t = m * np.ones_like(t)
for s, t_s in enumerate(changepoint_ts):
indx = t >= t_s
k_t[indx] += deltas[s]
m_t[indx] += gammas[s]
return k_t * t + m_t
@staticmethod
def piecewise_logistic(t, cap, deltas, k, m, changepoint_ts):
"""Evaluate the piecewise logistic function.
Parameters
----------
t: np.array of times on which the function is evaluated.
cap: np.array of capacities at each t.
deltas: np.array of rate changes at each changepoint.
k: Float initial rate.
m: Float initial offset.
changepoint_ts: np.array of changepoint times.
Returns
-------
Vector y(t).
"""
# Compute offset changes
k_cum = np.concatenate((np.atleast_1d(k), np.cumsum(deltas) + k))
gammas = np.zeros(len(changepoint_ts))
for i, t_s in enumerate(changepoint_ts):
gammas[i] = (
(t_s - m - np.sum(gammas))
* (1 - k_cum[i] / k_cum[i + 1])
)
# Get cumulative rate and offset at each t
k_t = k * np.ones_like(t)
m_t = m * np.ones_like(t)
for s, t_s in enumerate(changepoint_ts):
indx = t >= t_s
k_t[indx] += deltas[s]
m_t[indx] += gammas[s]
return cap / (1 + np.exp(-k_t * (t - m_t)))
def predict_trend(self, df):
"""Predict trend using the prophet model.
Parameters
----------
df: Prediction dataframe.
Returns
-------
Vector with trend on prediction dates.
"""
k = np.nanmean(self.params['k'])
m = np.nanmean(self.params['m'])
deltas = np.nanmean(self.params['delta'], axis=0)
t = np.array(df['t'])
if self.growth == 'linear':
trend = self.piecewise_linear(t, deltas, k, m, self.changepoints_t)
else:
cap = df['cap_scaled']
trend = self.piecewise_logistic(
t, cap, deltas, k, m, self.changepoints_t)
return trend * self.y_scale
def predict_seasonal_components(self, df):
"""Predict seasonality broken down into components.
Parameters
----------
df: Prediction dataframe.
Returns
-------
Dataframe with seasonal components.
"""
seasonal_features = self.make_all_seasonality_features(df)
lower_p = 100 * (1.0 - self.interval_width) / 2
upper_p = 100 * (1.0 + self.interval_width) / 2
components = pd.DataFrame({
'col': np.arange(seasonal_features.shape[1]),
'component': [x.split('_delim_')[0] for x in seasonal_features.columns],
})
# Remove the placeholder
components = components[components['component'] != 'zeros']
if components.shape[0] > 0:
X = seasonal_features.as_matrix()
data = {}
for component, features in components.groupby('component'):
cols = features.col.tolist()
comp_beta = self.params['beta'][:, cols]
comp_features = X[:, cols]
comp = (
np.matmul(comp_features, comp_beta.transpose())
* self.y_scale
)
data[component] = np.nanmean(comp, axis=1)
data[component + '_lower'] = np.nanpercentile(comp, lower_p,
axis=1)
data[component + '_upper'] = np.nanpercentile(comp, upper_p,
axis=1)
component_predictions = pd.DataFrame(data)
component_predictions['seasonal'] = (
component_predictions[components['component'].unique()].sum(1))
else:
component_predictions = pd.DataFrame(
{'seasonal': np.zeros(df.shape[0])})
return component_predictions
def predict_uncertainty(self, df):
"""Predict seasonality broken down into components.
Parameters
----------
df: Prediction dataframe.
Returns
-------
Dataframe with uncertainty intervals.
"""
n_iterations = self.params['k'].shape[0]
samp_per_iter = max(1, int(np.ceil(
self.uncertainty_samples / float(n_iterations)
)))
# Generate seasonality features once so we can re-use them.
seasonal_features = self.make_all_seasonality_features(df)
sim_values = {'yhat': [], 'trend': [], 'seasonal': []}
for i in range(n_iterations):
for _j in range(samp_per_iter):
sim = self.sample_model(df, seasonal_features, i)
for key in sim_values:
sim_values[key].append(sim[key])
lower_p = 100 * (1.0 - self.interval_width) / 2
upper_p = 100 * (1.0 + self.interval_width) / 2
series = {}
for key, value in sim_values.items():
mat = np.column_stack(value)
series['{}_lower'.format(key)] = np.nanpercentile(mat, lower_p,
axis=1)
series['{}_upper'.format(key)] = np.nanpercentile(mat, upper_p,
axis=1)
return pd.DataFrame(series)
def sample_model(self, df, seasonal_features, iteration):
"""Simulate observations from the extrapolated generative model.
Parameters
----------
df: Prediction dataframe.
seasonal_features: pd.DataFrame of seasonal features.
iteration: Int sampling iteration to use parameters from.
Returns
-------
Dataframe with trend, seasonality, and yhat, each like df['t'].
"""
trend = self.sample_predictive_trend(df, iteration)
beta = self.params['beta'][iteration]
seasonal = np.matmul(seasonal_features.as_matrix(), beta) * self.y_scale
sigma = self.params['sigma_obs'][iteration]
noise = np.random.normal(0, sigma, df.shape[0]) * self.y_scale
return pd.DataFrame({
'yhat': trend + seasonal + noise,
'trend': trend,
'seasonal': seasonal,
})
def sample_predictive_trend(self, df, iteration):
"""Simulate the trend using the extrapolated generative model.
Parameters
----------
df: Prediction dataframe.
seasonal_features: pd.DataFrame of seasonal features.
iteration: Int sampling iteration to use parameters from.
Returns
-------
np.array of simulated trend over df['t'].
"""
k = self.params['k'][iteration]
m = self.params['m'][iteration]
deltas = self.params['delta'][iteration]
t = np.array(df['t'])
T = t.max()
if T > 1:
# Get the time discretization of the history
dt = np.diff(self.history['t'])
dt = np.min(dt[dt > 0])
# Number of time periods in the future
N = np.ceil((T - 1) / float(dt))
S = len(self.changepoints_t)
prob_change = min(1, (S * (T - 1)) / N)
n_changes = np.random.binomial(N, prob_change)
# Sample ts
changepoint_ts_new = sorted(np.random.uniform(1, T, n_changes))
else:
# Case where we're not extrapolating.
changepoint_ts_new = []
n_changes = 0
# Get the empirical scale of the deltas, plus epsilon to avoid NaNs.
lambda_ = np.mean(np.abs(deltas)) + 1e-8
# Sample deltas
deltas_new = np.random.laplace(0, lambda_, n_changes)
# Prepend the times and deltas from the history
changepoint_ts = np.concatenate((self.changepoints_t,
changepoint_ts_new))
deltas = np.concatenate((deltas, deltas_new))
if self.growth == 'linear':
trend = self.piecewise_linear(t, deltas, k, m, changepoint_ts)
else:
cap = df['cap_scaled']
trend = self.piecewise_logistic(t, cap, deltas, k, m,
changepoint_ts)
return trend * self.y_scale
def make_future_dataframe(self, periods, freq='D', include_history=True):
"""Simulate the trend using the extrapolated generative model.
Parameters
----------
periods: Int number of periods to forecast forward.
freq: Any valid frequency for pd.date_range, such as 'D' or 'M'.
include_history: Boolean to include the historical dates in the data
frame for predictions.
Returns
-------
pd.Dataframe that extends forward from the end of self.history for the
requested number of periods.
"""
last_date = self.history_dates.max()
dates = pd.date_range(
start=last_date,
periods=periods + 1, # An extra in case we include start
freq=freq)
dates = dates[dates > last_date] # Drop start if equals last_date
dates = dates[:periods] # Return correct number of periods
if include_history:
dates = np.concatenate((np.array(self.history_dates), dates))
return pd.DataFrame({'ds': dates})
def plot(self, fcst, ax=None, uncertainty=True, plot_cap=True, xlabel='ds',
ylabel='y'):
"""Plot the Prophet forecast.
Parameters
----------
fcst: pd.DataFrame output of self.predict.
ax: Optional matplotlib axes on which to plot.
uncertainty: Optional boolean to plot uncertainty intervals.
plot_cap: Optional boolean indicating if the capacity should be shown
in the figure, if available.
xlabel: Optional label name on X-axis
ylabel: Optional label name on Y-axis
Returns
-------
A matplotlib figure.
"""
if ax is None:
fig = plt.figure(facecolor='w', figsize=(10, 6))
ax = fig.add_subplot(111)
else:
fig = ax.get_figure()
ax.plot(self.history['ds'].values, self.history['y'], 'k.')
ax.plot(fcst['ds'].values, fcst['yhat'], ls='-', c='#0072B2')
if 'cap' in fcst and plot_cap:
ax.plot(fcst['ds'].values, fcst['cap'], ls='--', c='k')
if uncertainty:
ax.fill_between(fcst['ds'].values, fcst['yhat_lower'],
fcst['yhat_upper'], color='#0072B2',
alpha=0.2)
ax.grid(True, which='major', c='gray', ls='-', lw=1, alpha=0.2)
ax.set_xlabel(xlabel)
ax.set_ylabel(ylabel)
fig.tight_layout()
return fig
def plot_components(self, fcst, uncertainty=True, plot_cap=True,
weekly_start=0, yearly_start=0):
"""Plot the Prophet forecast components.
Will plot whichever are available of: trend, holidays, weekly
seasonality, and yearly seasonality.
Parameters
----------
fcst: pd.DataFrame output of self.predict.
uncertainty: Optional boolean to plot uncertainty intervals.
plot_cap: Optional boolean indicating if the capacity should be shown
in the figure, if available.
weekly_start: Optional int specifying the start day of the weekly
seasonality plot. 0 (default) starts the week on Sunday. 1 shifts
by 1 day to Monday, and so on.
yearly_start: Optional int specifying the start day of the yearly
seasonality plot. 0 (default) starts the year on Jan 1. 1 shifts
by 1 day to Jan 2, and so on.
Returns
-------
A matplotlib figure.
"""
# Identify components to be plotted
components = [('trend', True),
('holidays', self.holidays is not None),
('weekly', 'weekly' in fcst),
('yearly', 'yearly' in fcst)]
components = [plot for plot, cond in components if cond]
npanel = len(components)
fig, axes = plt.subplots(npanel, 1, facecolor='w',
figsize=(9, 3 * npanel))
for ax, plot in zip(axes, components):
if plot == 'trend':
self.plot_trend(
fcst, ax=ax, uncertainty=uncertainty, plot_cap=plot_cap)
elif plot == 'holidays':
self.plot_holidays(fcst, ax=ax, uncertainty=uncertainty)
elif plot == 'weekly':
self.plot_weekly(
ax=ax, uncertainty=uncertainty, weekly_start=weekly_start)
elif plot == 'yearly':
self.plot_yearly(
ax=ax, uncertainty=uncertainty, yearly_start=yearly_start)
fig.tight_layout()
return fig
def plot_trend(self, fcst, ax=None, uncertainty=True, plot_cap=True):
"""Plot the trend component of the forecast.
Parameters
----------
fcst: pd.DataFrame output of self.predict.
ax: Optional matplotlib Axes to plot on.
uncertainty: Optional boolean to plot uncertainty intervals.
plot_cap: Optional boolean indicating if the capacity should be shown
in the figure, if available.
Returns
-------
a list of matplotlib artists
"""
artists = []
if not ax:
fig = plt.figure(facecolor='w', figsize=(10, 6))
ax = fig.add_subplot(111)
artists += ax.plot(fcst['ds'].values, fcst['trend'], ls='-',
c='#0072B2')
if 'cap' in fcst and plot_cap:
artists += ax.plot(fcst['ds'].values, fcst['cap'], ls='--', c='k')
if uncertainty:
artists += [ax.fill_between(
fcst['ds'].values, fcst['trend_lower'], fcst['trend_upper'],
color='#0072B2', alpha=0.2)]
ax.grid(True, which='major', c='gray', ls='-', lw=1, alpha=0.2)
ax.set_xlabel('ds')
ax.set_ylabel('trend')
return artists
def plot_holidays(self, fcst, ax=None, uncertainty=True):
"""Plot the holidays component of the forecast.
Parameters
----------
fcst: pd.DataFrame output of self.predict.
ax: Optional matplotlib Axes to plot on. One will be created if this
is not provided.
uncertainty: Optional boolean to plot uncertainty intervals.
Returns
-------
a list of matplotlib artists
"""
artists = []
if not ax:
fig = plt.figure(facecolor='w', figsize=(10, 6))
ax = fig.add_subplot(111)
holiday_comps = self.holidays['holiday'].unique()
y_holiday = fcst[holiday_comps].sum(1)
y_holiday_l = fcst[[h + '_lower' for h in holiday_comps]].sum(1)
y_holiday_u = fcst[[h + '_upper' for h in holiday_comps]].sum(1)
# NOTE the above CI calculation is incorrect if holidays overlap
# in time. Since it is just for the visualization we will not
# worry about it now.
artists += ax.plot(fcst['ds'].values, y_holiday, ls='-',
c='#0072B2')
if uncertainty:
artists += [ax.fill_between(fcst['ds'].values,
y_holiday_l, y_holiday_u,
color='#0072B2', alpha=0.2)]
ax.grid(True, which='major', c='gray', ls='-', lw=1, alpha=0.2)
ax.set_xlabel('ds')
ax.set_ylabel('holidays')
return artists
def plot_weekly(self, ax=None, uncertainty=True, weekly_start=0):
"""Plot the weekly component of the forecast.
Parameters
----------
ax: Optional matplotlib Axes to plot on. One will be created if this
is not provided.
uncertainty: Optional boolean to plot uncertainty intervals.
weekly_start: Optional int specifying the start day of the weekly
seasonality plot. 0 (default) starts the week on Sunday. 1 shifts
by 1 day to Monday, and so on.
Returns
-------
a list of matplotlib artists
"""
artists = []
if not ax:
fig = plt.figure(facecolor='w', figsize=(10, 6))
ax = fig.add_subplot(111)
# Compute weekly seasonality for a Sun-Sat sequence of dates.
days = (pd.date_range(start='2017-01-01', periods=7) +
pd.Timedelta(days=weekly_start))
df_w = pd.DataFrame({'ds': days, 'cap': 1.})
df_w = self.setup_dataframe(df_w)
seas = self.predict_seasonal_components(df_w)
days = days.weekday_name
artists += ax.plot(range(len(days)), seas['weekly'], ls='-',
c='#0072B2')
if uncertainty:
artists += [ax.fill_between(range(len(days)),
seas['weekly_lower'], seas['weekly_upper'],
color='#0072B2', alpha=0.2)]
ax.grid(True, which='major', c='gray', ls='-', lw=1, alpha=0.2)
ax.set_xticks(range(len(days)))
ax.set_xticklabels(days)
ax.set_xlabel('Day of week')
ax.set_ylabel('weekly')
return artists
def plot_yearly(self, ax=None, uncertainty=True, yearly_start=0):
"""Plot the yearly component of the forecast.
Parameters
----------
ax: Optional matplotlib Axes to plot on. One will be created if
this is not provided.
uncertainty: Optional boolean to plot uncertainty intervals.
yearly_start: Optional int specifying the start day of the yearly
seasonality plot. 0 (default) starts the year on Jan 1. 1 shifts
by 1 day to Jan 2, and so on.
Returns
-------
a list of matplotlib artists
"""
artists = []
if not ax:
fig = plt.figure(facecolor='w', figsize=(10, 6))
ax = fig.add_subplot(111)
# Compute yearly seasonality for a Jan 1 - Dec 31 sequence of dates.
df_y = pd.DataFrame(
{'ds': pd.date_range(start='2017-01-01', periods=365) +
pd.Timedelta(days=yearly_start), 'cap': 1.})
df_y = self.setup_dataframe(df_y)
seas = self.predict_seasonal_components(df_y)
artists += ax.plot(df_y['ds'], seas['yearly'], ls='-',
c='#0072B2')
if uncertainty:
artists += [ax.fill_between(
df_y['ds'].values, seas['yearly_lower'],
seas['yearly_upper'], color='#0072B2', alpha=0.2)]
ax.grid(True, which='major', c='gray', ls='-', lw=1, alpha=0.2)
months = MonthLocator(range(1, 13), bymonthday=1, interval=2)
ax.xaxis.set_major_formatter(FuncFormatter(
lambda x, pos=None: '{dt:%B} {dt.day}'.format(dt=num2date(x))))
ax.xaxis.set_major_locator(months)
ax.set_xlabel('Day of year')
ax.set_ylabel('yearly')
return artists