onnxruntime/tools/python/ort_test_dir_utils.py
Scott McKay 796ddeb2cb
Remove serialization of outer scope value info in ORT format model (#5077)
* Remove serialization of outer scope node arg info in ORT format model. We don't currently need it in a minimal build as only SessionState calls Graph::IsConstantInitializer and it doesn't search outer scope. If we do need it in the future the information can be calculated at runtime (small binary size cost to do so).

Motivation: ORT format model was 32% bigger for a BERT model with multiple levels of subgraph and a lot of nodes due to this. Size is about 5% larger of the original ONNX model with the change. ORT format has type/shape info for all nodes, and this model has 2000 nodes so this seems reasonable.

Added example code to dump ORT format model to json.

Fixed misc bug in python test script around handling float and non-float expected output.
2020-09-08 17:43:42 +10:00

232 lines
9.3 KiB
Python

import glob
import numpy as np
import onnx
import onnx_test_data_utils
import onnxruntime as ort
import os
import shutil
from onnx import numpy_helper
def _get_numpy_type(model_info, name):
for i in model_info:
if i.name == name:
type_name = i.type.WhichOneof('value')
if type_name == 'tensor_type':
return onnx.mapping.TENSOR_TYPE_TO_NP_TYPE[i.type.tensor_type.elem_type]
else:
raise ValueError(f"Type is not handled: {type_name}")
raise ValueError(f"{name} was not found in the model info.")
def _create_missing_input_data(model_inputs, name_input_map, symbolic_dim_values_map):
"""
Update name_input_map with random input for any missing values in the model inputs.
:param model_inputs: model.graph.input from an onnx model
:param name_input_map: Map of input names to values to update. Can be empty. Existing values are preserved.
:param symbolic_dim_values_map: Map of symbolic dimension names to values to use if creating data.
"""
for input in model_inputs:
if input.name in name_input_map and name_input_map[input.name] is not None:
continue
input_type = input.type.WhichOneof('value')
if input_type != 'tensor_type':
raise ValueError(f'Unsupported model. Need to handle input type of {input_type}')
shape = input.type.tensor_type.shape
dims = []
for dim in shape.dim:
dim_type = dim.WhichOneof('value')
if dim_type == 'dim_value':
dims.append(dim.dim_value)
elif dim_type == 'dim_param':
if dim.dim_param not in symbolic_dim_values_map:
raise ValueError(f"Value for symbolic dim {dim.dim_param} was not provided.")
dims.append(symbolic_dim_values_map[dim.dim_param])
else:
# TODO: see if we need to provide a way to specify these values. could ask for the whole
# shape for the input name instead.
raise ValueError("Unsupported model. Unknown dim with no value or symbolic name.")
np_type = onnx.mapping.TENSOR_TYPE_TO_NP_TYPE[input.type.tensor_type.elem_type]
# create random data. give it range -10 to 10 so if we convert to an integer type it's not all 0s and 1s
data = (np.random.standard_normal(dims) * 10).astype(np_type)
name_input_map[input.name] = data
def create_test_dir(model_path, root_path, test_name,
name_input_map=None, symbolic_dim_values_map=None,
name_output_map=None):
"""
Create a test directory that can be used with onnx_test_runner or onnxruntime_perf_test.
Generates random input data for any missing inputs.
Saves output from running the model if name_output_map is not provided.
:param model_path: Path to the onnx model file to use.
:param root_path: Root path to create the test directory in.
:param test_name: Name for test. Will be added to the root_path to create the test directory name.
:param name_input_map: Map of input names to numpy ndarray data for each input.
:param symbolic_dim_values_map: Map of symbolic dimension names to values to use for the input data if creating
using random data.
:param name_output_map: Optional map of output names to numpy ndarray expected output data.
If not provided, the model will be run with the input to generate output data to save.
:return: None
"""
model_path = os.path.abspath(model_path)
root_path = os.path.abspath(root_path)
test_dir = os.path.join(root_path, test_name)
test_data_dir = os.path.join(test_dir, "test_data_set_0")
if not os.path.exists(test_dir) or not os.path.exists(test_data_dir):
os.makedirs(test_data_dir)
model_filename = os.path.split(model_path)[-1]
test_model_filename = os.path.join(test_dir, model_filename)
shutil.copy(model_path, test_model_filename)
model = onnx.load(model_path)
model_inputs = model.graph.input
model_outputs = model.graph.output
def save_data(prefix, name_data_map, model_info):
idx = 0
for name, data in name_data_map.items():
if isinstance(data, dict):
# ignore. map<T1, T2> from traditional ML ops
pass
elif isinstance(data, list):
# ignore. vector<map<T1,T2>> from traditional ML ops. e.g. ZipMap output
pass
else:
np_type = _get_numpy_type(model_info, name)
tensor = numpy_helper.from_array(data.astype(np_type), name)
filename = os.path.join(test_data_dir, f"{prefix}_{idx}.pb")
with open(filename, 'wb') as f:
f.write(tensor.SerializeToString())
idx += 1
if not name_input_map:
name_input_map = {}
if not symbolic_dim_values_map:
symbolic_dim_values_map = {}
_create_missing_input_data(model_inputs, name_input_map, symbolic_dim_values_map)
save_data("input", name_input_map, model_inputs)
# save expected output data if provided. run model to create if not.
if not name_output_map:
output_names = [o.name for o in model_outputs]
sess = ort.InferenceSession(test_model_filename)
outputs = sess.run(output_names, name_input_map)
name_output_map = {}
for name, data in zip(output_names, outputs):
name_output_map[name] = data
save_data("output", name_output_map, model_outputs)
def read_test_dir(dir_name):
"""
Read the input and output .pb files from the provided directory.
Input files should have a prefix of 'input_'
Output files, which are optional, should have a prefix of 'output_'
:param dir_name: Directory to read files from
:return: tuple(dictionary of input name to numpy.ndarray of data,
dictionary of output name to numpy.ndarray)
"""
inputs = {}
outputs = {}
input_files = glob.glob(os.path.join(dir_name, 'input_*.pb'))
output_files = glob.glob(os.path.join(dir_name, 'output_*.pb'))
for i in input_files:
name, data = onnx_test_data_utils.read_tensorproto_pb_file(i)
inputs[name] = data
for o in output_files:
name, data = onnx_test_data_utils.read_tensorproto_pb_file(o)
outputs[name] = data
return inputs, outputs
def run_test_dir(model_or_dir):
"""
Run the test/s from a directory in ONNX test format.
All subdirectories with a prefix of 'test' are considered test input for one test run.
:param model_or_dir: Path to onnx model in test directory,
or the test directory name if the directory only contains one .onnx model.
:return: None
"""
if os.path.isdir(model_or_dir):
model_dir = os.path.abspath(model_or_dir)
# check there's only one onnx file
onnx_models = glob.glob(os.path.join(model_dir, '*.onnx'))
ort_models = glob.glob(os.path.join(model_dir, '*.ort'))
models = onnx_models + ort_models
if len(models) > 1:
raise ValueError(f"'Multiple .onnx and/or .ort files found in {model_dir}. '"
"'Please provide specific .onnx or .ort file as input.")
elif len(models) == 0:
raise ValueError(f"'No .onnx or .ort files found in {model_dir}.")
model_path = models[0]
else:
model_path = os.path.abspath(model_or_dir)
model_dir = os.path.dirname(model_path)
print(f'Running tests in {model_dir} for {model_path}')
test_dirs = [d for d in glob.glob(os.path.join(model_dir, 'test*')) if os.path.isdir(d)]
if not test_dirs:
raise ValueError(f"No directories with name starting with 'test' were found in {model_dir}.")
sess = ort.InferenceSession(model_path)
for d in test_dirs:
print(d)
inputs, expected_outputs = read_test_dir(d)
if expected_outputs:
output_names = list(expected_outputs.keys())
# handle case where there's a single expected output file but no name in it (empty string for name)
# e.g. ONNX test models 20190729\opset8\tf_mobilenet_v2_1.4_224
if len(output_names) == 1 and output_names[0] == '':
output_names = [o.name for o in sess.get_outputs()]
assert(len(output_names) == 1)
expected_outputs[output_names[0]] = expected_outputs['']
expected_outputs.pop('')
else:
output_names = [o.name for o in sess.get_outputs()]
run_outputs = sess.run(output_names, inputs)
failed = False
if expected_outputs:
for idx in range(len(output_names)):
expected = expected_outputs[output_names[idx]]
actual = run_outputs[idx]
if expected.dtype.char in np.typecodes['AllFloat']:
if not np.isclose(expected, actual, rtol=1.e-3, atol=1.e-3).all():
print(f'Mismatch for {output_names[idx]}:\nExpected:{expected}\nGot:{actual}')
failed = True
else:
if not np.equal(expected, actual).all():
print(f'Mismatch for {output_names[idx]}:\nExpected:{expected}\nGot:{actual}')
failed = True
print('FAILED' if failed else 'PASS')