onnxruntime/onnxruntime/python/tools/transformers/BertOnnxModel.py
Tianlei Wu 782c6c24b2
Rename bert to transformers (#3946)
* rename folder bert to transformers
* rename bert_model_optimization.py to optimizer.py
* update URL links in notebooks
2020-05-14 15:32:59 -07:00

1248 lines
54 KiB
Python

#-------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.
#--------------------------------------------------------------------------
import logging
import onnx
import sys
import argparse
import numpy as np
from collections import deque
from onnx import ModelProto, TensorProto, numpy_helper
from OnnxModel import OnnxModel
logger = logging.getLogger(__name__)
class BertOptimizationOptions:
def __init__(self, model_type):
self.enable_gelu = True
self.enable_layer_norm = True
self.enable_attention = True
self.enable_skip_layer_norm = True
self.enable_embed_layer_norm = True
self.enable_bias_skip_layer_norm = True
self.enable_bias_gelu = True
self.enable_gelu_approximation = False
if model_type == 'gpt2':
self.enable_skip_layer_norm = False
class BertOnnxModel(OnnxModel):
def __init__(self, model, num_heads, hidden_size):
assert num_heads > 0
assert hidden_size % num_heads == 0
super(BertOnnxModel, self).__init__(model)
self.num_heads = num_heads
self.hidden_size = hidden_size
# A lookup table with mask input as key, and mask index output as value
self.mask_indice = {}
# A lookup table with mask input as key, and cast (to int32) output as value
self.mask_casted = {}
self.bert_inputs = []
def cast_input_to_int32(self, input_name):
cast_output = input_name + '_int32'
# Avoid consequent Cast nodes.
inputs = [input_name]
output_name_to_node = self.output_name_to_node()
if input_name in output_name_to_node:
parent_node = output_name_to_node[input_name]
if parent_node and parent_node.op_type == 'Cast':
inputs = [parent_node.input[0]]
cast_node = onnx.helper.make_node('Cast', inputs=inputs, outputs=[cast_output])
cast_node.attribute.extend([onnx.helper.make_attribute("to", int(TensorProto.INT32))])
self.add_node(cast_node)
return cast_output, cast_node
def cast_graph_input_to_int32(self, input_name):
graph_input = self.find_graph_input(input_name)
if graph_input is not None and graph_input.type.tensor_type.elem_type != TensorProto.INT32:
cast_output, cast_node = self.cast_input_to_int32(input_name)
logger.debug(f"Casted graph input {input_name} to int32")
return True, cast_output
logger.debug(f"Did not cast graph input {input_name} to int32: found {graph_input is not None}")
return False, input_name
def remove_cast_int32(self, input_name):
input_name_to_nodes = self.input_name_to_nodes()
nodes = input_name_to_nodes[input_name]
for node in nodes:
if node.op_type == "Cast":
is_int32 = False
for att in node.attribute:
if att.name == 'to' and att.i == int(TensorProto.INT32):
is_int32 = True
break
if is_int32:
output_name = node.output[0]
self.remove_node(node)
self.replace_input_of_all_nodes(output_name, input_name)
def process_mask(self, input):
if input in self.mask_indice:
return self.mask_indice[input]
# Add cast to convert int64 to int32
if self.find_graph_input(input):
casted, input_name = self.cast_graph_input_to_int32(input)
else:
input_name, cast_node = self.cast_input_to_int32(input)
casted = True
if casted:
self.mask_casted[input] = input_name
# Add a mask processing node
output_name = self.create_node_name('mask_index')
mask_index_node = onnx.helper.make_node('ReduceSum',
inputs=[input_name],
outputs=[output_name],
name=self.create_node_name('ReduceSum', 'MaskReduceSum'))
mask_index_node.attribute.extend(
[onnx.helper.make_attribute("axes", [1]),
onnx.helper.make_attribute("keepdims", 0)])
self.add_node(mask_index_node)
self.mask_indice[input] = output_name
return output_name
def create_attention_node(self, mask_index, q_matmul, k_matmul, v_matmul, q_add, k_add, v_add, input, output):
q_weight = self.get_initializer(q_matmul.input[1])
k_weight = self.get_initializer(k_matmul.input[1])
v_weight = self.get_initializer(v_matmul.input[1])
q_bias = self.get_initializer(q_add.input[1])
k_bias = self.get_initializer(k_add.input[1])
v_bias = self.get_initializer(v_add.input[1])
if q_weight is None:
print(f"{q_matmul.input[1]} is not initializer. Please set do_constant_folding=True in torch.onnx.export")
return False
if not (k_weight and v_weight and q_bias and k_bias):
return False
qw = numpy_helper.to_array(q_weight)
assert qw.shape == (self.hidden_size, self.hidden_size)
kw = numpy_helper.to_array(k_weight)
assert kw.shape == (self.hidden_size, self.hidden_size)
vw = numpy_helper.to_array(v_weight)
assert vw.shape == (self.hidden_size, self.hidden_size)
qkv_weight = np.stack((qw, kw, vw), axis=-2)
qb = numpy_helper.to_array(q_bias)
assert qb.shape == (self.hidden_size,)
kb = numpy_helper.to_array(k_bias)
assert kb.shape == (self.hidden_size,)
vb = numpy_helper.to_array(v_bias)
assert vb.shape == (self.hidden_size,)
qkv_bias = np.stack((qb, kb, vb), axis=-2)
attention_node_name = self.create_node_name('Attention')
weight = onnx.helper.make_tensor(name=attention_node_name + '_qkv_weight',
data_type=TensorProto.FLOAT,
dims=[self.hidden_size, 3 * self.hidden_size],
vals=qkv_weight.flatten().tolist())
self.add_initializer(weight)
bias = onnx.helper.make_tensor(name=attention_node_name + '_qkv_bias',
data_type=TensorProto.FLOAT,
dims=[3 * self.hidden_size],
vals=qkv_bias.flatten().tolist())
self.add_initializer(bias)
attention_node = onnx.helper.make_node(
'Attention',
inputs=[input, attention_node_name + '_qkv_weight', attention_node_name + '_qkv_bias', mask_index],
outputs=[output],
name=attention_node_name)
attention_node.domain = "com.microsoft"
attention_node.attribute.extend([onnx.helper.make_attribute("num_heads", self.num_heads)])
self.add_node(attention_node)
return True
def fuse_attention(self):
"""
Fuse Attention subgraph into one Attention node.
"""
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
attention_count = 0
skip_layer_norm_nodes = self.get_nodes_by_op_type("SkipLayerNormalization")
for normalize_node in skip_layer_norm_nodes:
# SkipLayerNormalization has two inputs, and one of them is the
# root input for attention.
qkv_nodes = self.match_parent_path(normalize_node, ['Add', 'MatMul', 'Reshape', 'Transpose', 'MatMul'],
[None, 0, 0, 0, 0])
if qkv_nodes is None:
continue
other_inputs = []
for i, input in enumerate(normalize_node.input):
if input not in output_name_to_node:
continue
if input == qkv_nodes[0].output[0]:
continue
other_inputs.append(input)
if len(other_inputs) != 1:
continue
root_input = other_inputs[0]
children = input_name_to_nodes[root_input]
children_types = [child.op_type for child in children]
if children_types.count('MatMul') != 3:
continue
(add_qkv, matmul_qkv, reshape_qkv, transpose_qkv, matmul_qkv) = qkv_nodes
v_nodes = self.match_parent_path(matmul_qkv, ['Transpose', 'Reshape', 'Add', 'MatMul'], [1, 0, 0, 0])
if v_nodes is None:
logger.debug("fuse_attention: failed to match v path")
continue
(transpose_v, reshape_v, add_v, matmul_v) = v_nodes
qk_nodes = self.match_parent_path(matmul_qkv, ['Softmax', 'Add', 'Div', 'MatMul'], [0, 0, 0, 0])
if qk_nodes is None:
qk_nodes = self.match_parent_path(matmul_qkv, ['Softmax', 'Add', 'Mul', 'MatMul'], [0, 0, 0, 0])
if qk_nodes is None:
logger.debug("fuse_attention: failed to match qk path")
continue
(softmax_qk, add_qk, div_qk, matmul_qk) = qk_nodes
q_nodes = self.match_parent_path(matmul_qk, ['Transpose', 'Reshape', 'Add', 'MatMul'], [0, 0, 0, 0])
if q_nodes is None:
logger.debug("fuse_attention: failed to match q path")
continue
(transpose_q, reshape_q, add_q, matmul_q) = q_nodes
k_nodes = self.match_parent_path(matmul_qk, ['Transpose', 'Reshape', 'Add', 'MatMul'], [1, 0, 0, 0])
if k_nodes is None:
k_nodes = self.match_parent_path(matmul_qk, ['Transpose', 'Transpose', 'Reshape', 'Add', 'MatMul'],
[1, 0, 0, 0, 0])
if k_nodes is None:
logger.debug("fuse_attention: failed to match k path")
continue
(transpose_k, transpose_k_2, reshape_k, add_k, matmul_k) = k_nodes
else:
(transpose_k, reshape_k, add_k, matmul_k) = k_nodes
mask_nodes = self.match_parent_path(add_qk, ['Mul', 'Sub', 'Cast', 'Unsqueeze', 'Unsqueeze'],
[1, 0, 1, 0, 0])
if mask_nodes is None:
logger.debug("fuse_attention: failed to match mask path")
continue
(mul_mask, sub_mask, cast_mask, unsqueeze_mask, unsqueeze_mask_0) = mask_nodes
if matmul_v.input[0] == root_input and matmul_q.input[0] == root_input and matmul_v.input[0] == root_input:
mask_index = self.process_mask(unsqueeze_mask_0.input[0])
if not self.create_attention_node(mask_index, matmul_q, matmul_k, matmul_v, add_q, add_k, add_v,
root_input, reshape_qkv.output[0]):
continue
nodes_to_remove.extend([reshape_qkv, transpose_qkv, matmul_qkv])
nodes_to_remove.extend(qk_nodes)
nodes_to_remove.extend(q_nodes)
nodes_to_remove.extend(k_nodes)
nodes_to_remove.extend(v_nodes)
nodes_to_remove.extend(mask_nodes)
attention_count += 1
self.remove_nodes(nodes_to_remove)
self.update_graph()
logger.info(f"Fused Attention count:{attention_count}")
def fuse_gelu(self):
self.fuse_gelu_with_elf()
self.fuse_gelu_with_tanh()
"""
Fuse Gelu with Erf into one node:
Pattern 1:
+-------Mul(0.5)---------------------+
| |
| v
[root] --> Div -----> Erf --> Add --> Mul -->
(B=1.4142...) (1)
Pattern 2:
+------------------------------------+
| |
| v
[root] --> Div -----> Erf --> Add --> Mul -->Mul -->
(B=1.4142...) (1) (0.5)
Note that constant input for Add and Mul could be first or second input: like either A=0.5 or B=0.5 is fine.
"""
def fuse_gelu_with_elf(self):
logger.debug(f"start fuse_gelu_with_elf")
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
nodes_to_add = []
for node in self.get_nodes_by_op_type('Erf'):
erf_node = node
if erf_node.output[0] not in input_name_to_nodes:
continue
children = input_name_to_nodes[erf_node.output[0]]
if len(children) != 1 or children[0].op_type != 'Add':
continue
add_after_erf = children[0]
if not self.has_constant_input(add_after_erf, 1):
continue
if add_after_erf.output[0] not in input_name_to_nodes:
continue
children = input_name_to_nodes[add_after_erf.output[0]]
if len(children) != 1 or children[0].op_type != 'Mul':
continue
mul_after_erf = children[0]
div = self.match_parent(erf_node, 'Div', 0, output_name_to_node)
if div is None:
continue
if self.find_constant_input(div, 1.4142, delta=0.001) != 1:
continue
subgraph_input = div.input[0]
another = 1 if mul_after_erf.input[0] == add_after_erf.output[0] else 0
if subgraph_input == mul_after_erf.input[another]: # pattern 2
children = input_name_to_nodes[mul_after_erf.output[0]]
if len(children) != 1 or children[0].op_type != 'Mul':
continue
mul_half = children[0]
if not self.has_constant_input(mul_half, 0.5):
continue
subgraph_output = mul_half.output[0]
else: # pattern 1
mul_half = self.match_parent(mul_after_erf, 'Mul', another, output_name_to_node)
if mul_half is None:
continue
if not self.has_constant_input(mul_half, 0.5):
continue
if subgraph_input not in mul_half.input:
continue
subgraph_output = mul_after_erf.output[0]
subgraph_nodes = [div, erf_node, add_after_erf, mul_after_erf, mul_half]
if not self.is_safe_to_fuse_nodes(subgraph_nodes, [subgraph_output], input_name_to_nodes,
output_name_to_node):
continue
nodes_to_remove.extend(subgraph_nodes)
gelu_node = onnx.helper.make_node('Gelu', inputs=[subgraph_input], outputs=[subgraph_output])
gelu_node.domain = "com.microsoft"
nodes_to_add.append(gelu_node)
self.remove_nodes(nodes_to_remove)
self.add_nodes(nodes_to_add)
if len(nodes_to_add) > 0:
logger.info(f"Fused Gelu count:{len(nodes_to_add)}")
"""
Fuse Gelu with tanh into one node:
+---------------------------+
| |
| v
[root] --> Pow --> Mul -----> Add --> Mul --> Tanh --> Add --> Mul
| (Y=3) (B=0.0447...) (B=0.7978...) (B=1) ^
| |
+------> Mul(B=0.5)--------------------------------------------+
Note that constant input for Add and Mul could be first or second input: like either A=0.5 or B=0.5 is fine.
"""
def fuse_gelu_with_tanh(self):
logger.debug(f"start FastGelu fusion...")
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
nodes_to_add = []
for node in self.get_nodes_by_op_type('Tanh'):
tanh_node = node
if node.output[0] not in input_name_to_nodes:
continue
children = input_name_to_nodes[node.output[0]]
if len(children) != 1 or children[0].op_type != 'Add':
continue
add_after_tanh = children[0]
if not self.has_constant_input(add_after_tanh, 1.0):
continue
if add_after_tanh.output[0] not in input_name_to_nodes:
continue
children = input_name_to_nodes[add_after_tanh.output[0]]
if len(children) != 1 or children[0].op_type != 'Mul':
continue
mul_after_tanh = children[0]
mul_half = self.match_parent(mul_after_tanh, 'Mul', None, output_name_to_node)
if mul_half is None:
continue
i = self.find_constant_input(mul_half, 0.5)
if i < 0:
continue
root_node = self.get_parent(mul_half, 0 if i == 1 else 1, output_name_to_node)
if root_node is None:
continue
mul_before_tanh = self.match_parent(tanh_node, 'Mul', 0, output_name_to_node)
if mul_before_tanh is None:
continue
i = self.find_constant_input(mul_before_tanh, 0.7978, delta=0.0001)
if i < 0:
continue
add_before_tanh = self.match_parent(mul_before_tanh, 'Add', 0 if i == 1 else 1, output_name_to_node)
if add_before_tanh is None:
continue
mul_after_pow = self.match_parent(add_before_tanh, 'Mul', None, output_name_to_node, exclude=[root_node])
if mul_after_pow is None:
continue
i = self.find_constant_input(mul_after_pow, 0.0447, delta=0.0001)
if i < 0:
continue
pow = self.match_parent(mul_after_pow, 'Pow', 0 if i == 1 else 1, output_name_to_node)
if pow is None:
continue
if not self.has_constant_input(pow, 3.0):
continue
if pow.input[0] != root_node.output[0]:
continue
subgraph_nodes = [
mul_after_tanh, mul_half, add_after_tanh, tanh_node, mul_before_tanh, add_before_tanh, mul_after_pow,
pow
]
if not self.is_safe_to_fuse_nodes(subgraph_nodes, [mul_after_tanh.output[0]], input_name_to_nodes,
output_name_to_node):
continue
nodes_to_remove.extend(subgraph_nodes)
gelu_node = onnx.helper.make_node('FastGelu',
inputs=[root_node.output[0]],
outputs=mul_after_tanh.output,
name=self.create_node_name('FastGelu'))
gelu_node.domain = "com.microsoft"
nodes_to_add.append(gelu_node)
if len(nodes_to_add) > 0:
logger.info(f"Fused FastGelu count: {len(nodes_to_add)}")
self.remove_nodes(nodes_to_remove)
self.add_nodes(nodes_to_add)
def fuse_bias_gelu(self, is_fastgelu):
gelu_op_type = 'FastGelu' if is_fastgelu else 'Gelu'
bias_gelu_op_type = 'FastGelu' if is_fastgelu else 'BiasGelu'
logger.debug(f"start Bias and {gelu_op_type} fusion...")
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
nodes_to_add = []
# Don't need to fuse Gelu+Add here because ORT native code can handle it
for node in self.get_nodes_by_op_type(gelu_op_type):
if len(node.input) != 1:
continue
nodes = self.match_parent_path(node, ['Add', 'MatMul'], [0, None])
if nodes is None:
continue
(add, matmul) = nodes
# bias should be one dimension
bias_index = -1
for i, input in enumerate(add.input):
initializer = self.get_initializer(input)
if initializer is None:
continue
bias_index = i
bias_weight = numpy_helper.to_array(initializer)
break
if bias_weight is None:
continue
if len(bias_weight.shape) != 1:
continue
subgraph_nodes = [node, add]
if not self.is_safe_to_fuse_nodes(subgraph_nodes, [node.output[0]], input_name_to_nodes,
output_name_to_node):
continue
nodes_to_remove.extend(subgraph_nodes)
gelu_node = onnx.helper.make_node(bias_gelu_op_type,
inputs=[matmul.output[0], add.input[bias_index]],
outputs=node.output,
name=self.create_node_name(bias_gelu_op_type, gelu_op_type + "_AddBias_"))
gelu_node.domain = "com.microsoft"
nodes_to_add.append(gelu_node)
if len(nodes_to_add) > 0:
logger.info(f"Fused {bias_gelu_op_type} with Bias count:{len(nodes_to_add)}")
self.remove_nodes(nodes_to_remove)
self.add_nodes(nodes_to_add)
def gelu_approximation(self):
nodes_to_add = []
nodes_to_remove = self.get_nodes_by_op_type("Gelu") + self.get_nodes_by_op_type("BiasGelu")
for node in nodes_to_remove:
new_node = onnx.helper.make_node("FastGelu",
inputs=node.input,
outputs=node.output,
name=self.create_node_name("FastGelu", node.op_type + "_Approximation"))
new_node.domain = "com.microsoft"
nodes_to_add.append(new_node)
if len(nodes_to_add) > 0:
logger.info(f"Gelu approximation count:{len(nodes_to_add)}")
self.remove_nodes(nodes_to_remove)
self.add_nodes(nodes_to_add)
def fuse_add_bias_skip_layer_norm(self):
logger.debug(f"start Bias and SkipLayerNormalization fusion...")
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
nodes_to_add = []
skip_layer_norm_nodes = self.get_nodes_by_op_type("SkipLayerNormalization")
for node in skip_layer_norm_nodes:
if len(node.input) != 4:
continue
return_indice = []
nodes = self.match_parent_path(node, ['Add', 'MatMul'], [None, None], None, return_indice)
if nodes is None:
continue
assert len(return_indice) == 2
add_input_index = return_indice[0]
if add_input_index >= 2:
continue
(add, matmul) = nodes
# bias should be one dimension
bias_index = -1
for i, input in enumerate(add.input):
initializer = self.get_initializer(input)
if initializer is None:
continue
bias_index = i
bias_weight = numpy_helper.to_array(initializer)
break
if bias_weight is None:
logger.debug(f"Bias weight not found")
continue
if len(bias_weight.shape) != 1:
logger.debug(f"Bias weight is not 1D")
continue
subgraph_nodes = [node, add]
if not self.is_safe_to_fuse_nodes(subgraph_nodes, [node.output[0]], input_name_to_nodes,
output_name_to_node):
logger.debug(f"Skip fusing SkipLayerNormalization with Bias since it is not safe")
continue
nodes_to_remove.extend(subgraph_nodes)
new_node = onnx.helper.make_node("SkipLayerNormalization",
inputs=[
node.input[1 - add_input_index], matmul.output[0], node.input[2],
node.input[3], add.input[bias_index]
],
outputs=node.output,
name=self.create_node_name("SkipLayerNormalization",
"SkipLayerNorm_AddBias_"))
new_node.domain = "com.microsoft"
nodes_to_add.append(new_node)
if len(nodes_to_add) > 0:
logger.info(f"Fused SkipLayerNormalization with Bias count:{len(nodes_to_add)}")
self.remove_nodes(nodes_to_remove)
self.add_nodes(nodes_to_add)
def fuse_reshape(self):
logger.debug(f"start Reshape fusion...")
nodes = self.nodes()
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
nodes_to_add = []
for reshape_node in self.get_nodes_by_op_type('Reshape'):
if reshape_node.input[1] not in output_name_to_node:
continue
concat_node = output_name_to_node[reshape_node.input[1]]
if concat_node.op_type != 'Concat' or len(concat_node.input) < 3 or len(concat_node.input) > 4:
continue
path0 = self.match_parent_path(concat_node, ['Unsqueeze', 'Gather', 'Shape'], [0, 0, 0],
output_name_to_node)
if path0 is None:
continue
(unsqueeze_0, gather_0, shape_0) = path0
path1 = self.match_parent_path(concat_node, ['Unsqueeze', 'Gather', 'Shape'], [1, 0, 0],
output_name_to_node)
if path1 is None:
continue
(unsqueeze_1, gather_1, shape_1) = path1
shape = []
gather_value = self.get_constant_value(gather_0.input[1])
if gather_value == 0:
shape.append(0)
gather_value = self.get_constant_value(gather_1.input[1])
if gather_value == 1:
shape.append(0)
if len(shape) != 2:
continue
path2 = []
path3 = []
shape_nodes = [shape_0, shape_1]
if len(concat_node.input) == 3 and self.get_initializer(concat_node.input[2]) is None:
path2 = self.match_parent_path(concat_node, ['Unsqueeze', 'Mul', 'Gather', 'Shape'], [2, 0, 0, 0],
output_name_to_node)
if path2 is None:
path2 = self.match_parent_path(
concat_node, ['Unsqueeze', 'Mul', 'Squeeze', 'Slice', 'Shape'], [2, 0, 0, 0, 0],
output_name_to_node) # GPT2 exported by PyTorch 1.4 with opset_version=11
if path2 is None:
continue
path3 = self.match_parent_path(concat_node, ['Unsqueeze', 'Mul', 'Gather', 'Shape'], [2, 0, 1, 0],
output_name_to_node)
if path3 is None:
path3 = self.match_parent_path(
concat_node, ['Unsqueeze', 'Mul', 'Squeeze', 'Slice', 'Shape'], [2, 0, 1, 0, 0],
output_name_to_node) # GPT2 exported by PyTorch 1.4 with opset_version=11
if path3 is None:
continue
shape_nodes.extend([path2[-1], path3[-1]])
shape.append(-1)
elif (len(concat_node.input) > 2):
concat_2 = self.get_initializer(concat_node.input[2])
if concat_2 is None:
continue
concat_value = numpy_helper.to_array(concat_2)
if isinstance(concat_value, list):
shape.extend(concat_value)
else:
shape.append(concat_value)
if len(concat_node.input) == 4 and self.get_initializer(concat_node.input[3]) is None:
if -1 in shape:
continue
path2 = self.match_parent_path(concat_node, ['Unsqueeze', 'Div', 'Gather', 'Shape'], [3, 0, 0, 0],
output_name_to_node)
if path2 is None:
path2 = self.match_parent_path(
concat_node, ['Unsqueeze', 'Div', 'Squeeze', 'Slice', 'Shape'], [3, 0, 0, 0, 0],
output_name_to_node) # GPT2 exported by PyTorch 1.4 with opset_version=11
if path2 is None:
continue
shape_nodes.extend([path2[-1]])
shape.append(-1)
elif (len(concat_node.input) > 3):
concat_3 = self.get_initializer(concat_node.input[3])
if concat_3 is None:
continue
concat_value = numpy_helper.to_array(concat_3)
if isinstance(concat_value, list):
shape.extend(concat_value)
else:
shape.append(concat_value)
root_input = reshape_node.input[0]
same_shape_input = True
for shape_node in shape_nodes:
if shape_node.input[0] != root_input:
same_shape_input = False
if not same_shape_input:
continue
shape_value = np.asarray(shape, dtype=np.int64)
constant_shape_name = self.create_node_name('Constant', 'constant_shape')
new_node = onnx.helper.make_node('Constant',
inputs=[],
outputs=[constant_shape_name],
value=onnx.helper.make_tensor(name='const_tensor',
data_type=TensorProto.INT64,
dims=shape_value.shape,
vals=shape_value))
reshape_node.input[1] = constant_shape_name
reshape_node.name = self.create_node_name('Reshape', 'Reshape_Fuse')
nodes_to_remove.extend([concat_node])
nodes_to_remove.extend(path0)
nodes_to_remove.extend(path1)
nodes_to_remove.extend(path2)
nodes_to_remove.extend(path3)
nodes_to_add.append(new_node)
logger.info(f"Fused Reshape count:{len(nodes_to_add)}")
self.remove_nodes(nodes_to_remove)
self.add_nodes(nodes_to_add)
"""
Embed Layer Normalization will fuse embeddings and mask processing into one node.
The embeddings before conversion:
(input_ids) --------> Gather ----------+ (segment_ids)
| | |
| v v
+--> Shape --> Expand -> Gather---->Add Gather
| ^ | |
| | v v
+---(optional graph) SkipLayerNormalization
Optional graph is used to generate position list (0, 1, ...) per batch. It can be a constant in some model.
(input_ids) --> Gather -----+ Slice
| |
v v
(segment_ids)--> Gather --->Add Reshape
| |
v v
SkipLayerNormalization
"""
def fuse_embed_layer_without_mask(self):
logger.debug(f"start EmbedLayerNormalization (no mask) fusion...")
nodes = self.nodes()
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
# Find the first normalize node could be embedding layer.
normalize_node = None
skip_layer_norm_nodes = self.get_nodes_by_op_type("SkipLayerNormalization")
for node in skip_layer_norm_nodes:
if self.match_parent_path(node, ['Add', 'Gather'], [0, 0]) is not None:
if self.find_first_child_by_type(node, 'Attention', input_name_to_nodes, recursive=False) is not None:
normalize_node = node
break
# In case user disables attention fusion, check whether subgraph looks like Attention.
if node.output[0] not in input_name_to_nodes:
continue
children = input_name_to_nodes[node.output[0]]
children_types = sorted([child.op_type for child in children])
if children_types == ['MatMul', 'MatMul', 'MatMul', 'SkipLayerNormalization']:
normalize_node = node
break
if normalize_node is None:
if len(self.get_nodes_by_op_type("EmbedLayerNormalization")) == 0:
logger.info("Failed to find embedding layer")
return
# Here we assume the order of embedding is word_embedding +
# position_embedding + segment_embedding.
word_embedding_path = self.match_parent_path(normalize_node, ['Add', 'Gather'], [0, 0])
if word_embedding_path is None:
logger.info("Failed to find word embedding")
return
add_node, word_embedding_gather = word_embedding_path
input_ids = word_embedding_gather.input[1]
position_embedding_path = self.match_parent_path(normalize_node, ['Reshape', 'Slice'], [1, 0])
position_embedding_expand = None
if position_embedding_path is None:
position_embedding_path = self.match_parent_path(add_node, ['Gather', 'Expand', 'Shape'], [1, 1, 1])
if position_embedding_path is None:
position_embedding_path = self.match_parent_path(
add_node, ['Gather', 'Expand', 'Concat', 'Unsqueeze', 'Gather', 'Shape'], [1, 1, 1, 1, 0, 0])
if position_embedding_path is None:
logger.info("Failed to find position embedding")
return
position_embedding_weight_node, position_embedding_expand, _, _, _, position_embedding_shape = position_embedding_path
else:
position_embedding_weight_node, position_embedding_expand, position_embedding_shape = position_embedding_path
if not position_embedding_shape is None and position_embedding_shape.input[0] != input_ids:
logger.info("position and word embedding is expected to be applied on same input")
return
else:
_, position_embedding_weight_node = position_embedding_path
segment_embedding_path = self.match_parent_path(normalize_node, ['Gather'], [1])
if segment_embedding_path is None:
segment_embedding_path = self.match_parent_path(normalize_node, ['Add', 'Gather'], [0, 1])
if segment_embedding_path is None:
logger.info("Failed to find segment embedding")
return
_, segment_embedding_gather = segment_embedding_path
else:
segment_embedding_gather = segment_embedding_path[0]
segment_ids = segment_embedding_gather.input[1]
if position_embedding_expand:
input_parent = self.get_parent(position_embedding_shape, 0, output_name_to_node)
subgraph_nodes = self.get_parent_subgraph_nodes(position_embedding_expand,
[input_parent] if input_parent else [], output_name_to_node)
nodes_to_remove.extend(subgraph_nodes)
nodes_to_remove.extend(word_embedding_path)
nodes_to_remove.extend(position_embedding_path)
nodes_to_remove.extend(segment_embedding_path)
nodes_to_remove.extend([normalize_node])
# store inputs for further processing
if self.find_graph_input(input_ids):
self.bert_inputs = [input_ids, segment_ids] if self.find_graph_input(segment_ids) else [input_ids]
# Cast input_ids and segment_ids to int32.
if self.find_graph_input(input_ids):
casted, input_ids = self.cast_graph_input_to_int32(input_ids)
else:
input_ids, input_ids_cast_node = self.cast_input_to_int32(input_ids)
if self.find_graph_input(segment_ids):
casted, segment_ids = self.cast_graph_input_to_int32(segment_ids)
else:
segment_ids, segment_ids_cast_node = self.cast_input_to_int32(segment_ids)
segment_id_path = self.match_parent_path(
segment_ids_cast_node, ['ConstantOfShape', 'Concat', 'Unsqueeze', 'Gather', 'Shape', 'Cast'],
[0, 0, 1, 0, 0, 0])
if segment_id_path and input_ids_cast_node and input_ids_cast_node.input[0] == segment_id_path[-1].input[0]:
logger.debug("Simplify semgent id path...")
self.add_node(
onnx.helper.make_node('Shape', inputs=[input_ids_cast_node.input[0]], outputs=["input_shape"]))
self.add_node(
onnx.helper.make_node('ConstantOfShape',
inputs=["input_shape"],
outputs=["zeros_for_input_shape"],
value=onnx.helper.make_tensor("value", onnx.TensorProto.INT32, [1], [1])))
segment_ids = "zeros_for_input_shape"
embed_node = onnx.helper.make_node(
'EmbedLayerNormalization',
inputs=[
input_ids,
segment_ids,
word_embedding_gather.input[0],
position_embedding_weight_node.input[0],
segment_embedding_gather.input[0],
normalize_node.input[2],
normalize_node.input[3] # gamma and beta
],
outputs=["embed_output", "dummy_mask_index"],
name="EmbedLayer")
embed_node.domain = "com.microsoft"
# Pass attribute "epsilon" from normalize node to EmbedLayerNormalization.
for att in normalize_node.attribute:
if att.name == 'epsilon':
embed_node.attribute.extend([att])
# Set default value to 1e-12 if no attribute is found.
if len(embed_node.attribute) == 0:
embed_node.attribute.extend([onnx.helper.make_attribute("epsilon", 1.0E-12)])
self.replace_input_of_all_nodes(normalize_node.output[0], 'embed_output')
self.remove_nodes(nodes_to_remove)
return embed_node
def fuse_embed_layer(self):
embed_node = self.fuse_embed_layer_without_mask()
if embed_node is None:
logger.info("Fused EmbedLayerNormalization count: 0")
return
if len(self.mask_indice) > 1:
logger.info("There are multiple mask inputs found!")
elif len(self.mask_indice) != 1:
logger.info("Fused EmbedLayerNormalization (no mask) count: 1")
else:
mask_input_name = next(iter(self.mask_indice))
mask_output_name = self.mask_indice[mask_input_name]
output_name_to_node = self.output_name_to_node()
mask_node = output_name_to_node[mask_output_name]
nodes_to_remove = []
nodes_to_remove.extend([mask_node])
# store inputs for further processing
self.bert_inputs.append(mask_input_name)
# When mask has been casted to int32, use that casted one as input of embed layer norm.
if mask_input_name in self.mask_casted:
mask_input_name = self.mask_casted[mask_input_name]
embed_node.input.append(mask_input_name)
embed_node.output[1] = mask_output_name
logger.info("Added mask to EmbedLayerNormalization")
logger.info("Fused EmbedLayerNormalization count: 1")
self.add_node(embed_node)
self.prune_graph()
def get_bert_inputs(self, include_mask=True):
return self.bert_inputs if include_mask else self.bert_inputs[:2]
def get_bert_input_shape(self):
graph = self.graph()
bert_inputs = self.get_bert_inputs()
for input in graph.input:
if input.name in bert_inputs:
tensor_type = input.type.tensor_type
if (tensor_type.HasField("shape")):
batch_size = None
d = tensor_type.shape.dim[0]
if (d.HasField("dim_value")):
batch_size = d.dim_value
elif (d.HasField("dim_param")):
batch_size = str(d.dim_param)
sequence_length = None
d = tensor_type.shape.dim[1]
if (d.HasField("dim_value")):
sequence_length = d.dim_value
elif (d.HasField("dim_param")):
sequence_length = str(d.dim_param)
return batch_size, sequence_length
return None, None
def change_input_to_int32(self):
original_opset_version = self.model.opset_import[0].version
graph = self.graph()
batch_size, sequence_length = self.get_bert_input_shape()
new_graph_inputs = []
bert_inputs = self.get_bert_inputs()
for input in graph.input:
if input.name in bert_inputs:
self.remove_cast_int32(input.name)
input_shape = [
batch_size if isinstance(batch_size, int) else 1,
sequence_length if isinstance(sequence_length, int) else 128
]
int32_input = onnx.helper.make_tensor_value_info(input.name, TensorProto.INT32, input_shape)
new_graph_inputs.append(int32_input)
else:
new_graph_inputs.append(input)
graph_def = onnx.helper.make_graph(graph.node,
'int32 inputs',
new_graph_inputs,
graph.output,
initializer=graph.initializer,
value_info=graph.value_info)
self.model = onnx.helper.make_model(graph_def, producer_name='bert model optimizer')
if isinstance(batch_size, str) or isinstance(sequence_length, str):
self.use_dynamic_axes(batch_size if isinstance(batch_size, str) else None,
sequence_length if isinstance(sequence_length, str) else None)
# restore opset version
self.model.opset_import[0].version = original_opset_version
def use_dynamic_axes(self, dynamic_batch_dim='batch_size', dynamic_seq_len='max_seq_len'):
"""
Update input and output shape to use dynamic axes.
"""
bert_inputs = self.get_bert_inputs()
dynamic_batch_inputs = {}
for input in self.model.graph.input:
for bert_input in bert_inputs:
if bert_input == input.name:
dim_proto = input.type.tensor_type.shape.dim[0]
dim_proto.dim_param = dynamic_batch_dim
if dynamic_seq_len is not None:
dim_proto = input.type.tensor_type.shape.dim[1]
dim_proto.dim_param = dynamic_seq_len
for output in self.model.graph.output:
dim_proto = output.type.tensor_type.shape.dim[0]
dim_proto.dim_param = dynamic_batch_dim
def fuse_layer_norm(self):
"""
Fuse Layer Normalization subgraph into one node LayerNormalization:
+----------------------+
| |
| v
[Root] --> ReduceMean --> Sub --> Pow --> ReduceMean --> Add --> Sqrt --> Div --> Mul --> Add
(axis=2 or -1) | (Y=2) (axis=2 or -1) (E-6 or E-12 or 0) ^
| |
+-----------------------------------------------+
It also handles cases of duplicated sub nodes exported from older version of PyTorch:
+----------------------+
| v
| +-------> Sub-----------------------------------------------+
| | |
| | v
[Root] --> ReduceMean --> Sub --> Pow --> ReduceMean --> Add --> Sqrt --> Div --> Mul --> Add
| ^
| |
+----------------------+
"""
logger.debug(f"start LayerNormalization fusion...")
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
skip_layernorm_nodes = []
layernorm_nodes = []
for node in self.nodes():
if node.op_type == 'ReduceMean':
children = self.get_children(node, input_name_to_nodes)
if len(children) == 0 or len(children) > 2:
continue
parent = self.get_parent(node, 0, output_name_to_node)
if parent is None:
continue
if children[0].op_type != 'Sub' or self.get_parent(children[0], 0, output_name_to_node) != parent:
continue
if len(children) == 2:
if children[0].op_type != 'Sub' or self.get_parent(children[1], 0, output_name_to_node) != parent:
continue
div_node = None
for child in children:
if child.op_type == 'Sub':
div_node = self.find_first_child_by_type(child, 'Div', input_name_to_nodes, recursive=False)
if div_node is not None:
break
if div_node is None:
continue
parent_nodes = self.match_parent_path(div_node, ['Sqrt', 'Add', 'ReduceMean', 'Pow', 'Sub'],
[1, 0, 0, 0, 0], output_name_to_node)
if parent_nodes is None:
continue
sqrt_node, second_add_node, reduce_mean_node, pow_node, sub_node = parent_nodes
if sub_node not in children:
continue
i, add_weight = self.get_constant_input(second_add_node)
if add_weight is None or add_weight <= 0 or add_weight > 1.0E-5:
continue
if not self.find_constant_input(pow_node, 2.0) == 1:
continue
mul_node = input_name_to_nodes[div_node.output[0]][0]
if mul_node.op_type != 'Mul':
continue
last_add_node = input_name_to_nodes[mul_node.output[0]][0]
if last_add_node.op_type != 'Add':
continue
subgraph_nodes = [node]
subgraph_nodes.extend(children)
subgraph_nodes.extend(
[last_add_node, mul_node, div_node, sqrt_node, second_add_node, reduce_mean_node, pow_node])
if not self.is_safe_to_fuse_nodes(subgraph_nodes, last_add_node.output, input_name_to_nodes,
output_name_to_node):
continue
weight_input = mul_node.input[1 - self.input_index(div_node.output[0], mul_node)]
bias_input = last_add_node.input[1 - self.input_index(mul_node.output[0], last_add_node)]
if not self.is_constant_with_specified_dimension(weight_input, 1, "layernorm weight"):
continue
if not self.is_constant_with_specified_dimension(bias_input, 1, "layernorm bias"):
continue
nodes_to_remove.extend(subgraph_nodes)
normalize_node = onnx.helper.make_node('LayerNormalization',
inputs=[node.input[0], weight_input, bias_input],
outputs=[last_add_node.output[0]])
normalize_node.attribute.extend([onnx.helper.make_attribute("epsilon", float(add_weight))])
layernorm_nodes.extend([normalize_node])
self.remove_nodes(nodes_to_remove)
self.add_nodes(layernorm_nodes)
logger.info(f"Fused LayerNormalization count: {len(layernorm_nodes)}")
def fuse_skip_layer_norm(self):
"""
Fuse Add + LayerNormalization into one node: SkipLayerNormalization
"""
logger.debug(f"start SkipLayerNormaliation fusion...")
input_name_to_nodes = self.input_name_to_nodes()
output_name_to_node = self.output_name_to_node()
nodes_to_remove = []
skip_layernorm_nodes = []
for node in self.nodes():
if node.op_type == 'LayerNormalization':
add = self.get_parent(node, 0, output_name_to_node)
if add is None:
continue
if add.op_type == 'Add' and self.is_safe_to_fuse_nodes([add, node], node.output, input_name_to_nodes,
output_name_to_node):
nodes_to_remove.extend([add, node])
normalize_node = onnx.helper.make_node(
"SkipLayerNormalization",
inputs=[add.input[0], add.input[1], node.input[1], node.input[2]],
outputs=[node.output[0]],
name=self.create_node_name("SkipLayerNormalization", name_prefix="SkipLayerNorm"))
normalize_node.domain = "com.microsoft"
# Pass attribute "epsilon" from layernorm node to SkipLayerNormalization
for att in node.attribute:
if att.name == 'epsilon':
normalize_node.attribute.extend([att])
# Set default epsilon if no epsilon exists from layernorm
if len(normalize_node.attribute) == 0:
normalize_node.attribute.extend([onnx.helper.make_attribute("epsilon", 1.0E-12)])
skip_layernorm_nodes.extend([normalize_node])
self.remove_nodes(nodes_to_remove)
self.add_nodes(skip_layernorm_nodes)
logger.info(f"Fused SkipLayerNormalization count: {len(skip_layernorm_nodes)}")
def preprocess(self):
return
def postprocess(self):
self.prune_graph()
def optimize(self, options: BertOptimizationOptions = None):
if (options is None) or options.enable_layer_norm:
self.fuse_layer_norm()
if (options is None) or options.enable_gelu:
self.fuse_gelu()
self.preprocess()
self.fuse_reshape()
if (options is None) or options.enable_skip_layer_norm:
self.fuse_skip_layer_norm()
if (options is None) or options.enable_attention:
self.fuse_attention()
if (options is None) or options.enable_embed_layer_norm:
self.fuse_embed_layer()
# Post-processing like removing extra reshape nodes.
self.postprocess()
# Bias fusion is done after postprocess to avoid extra Reshape between bias and Gelu/FastGelu/SkipLayerNormalization
if (options is None) or options.enable_bias_gelu:
# Fuse Gelu and Add Bias before it.
self.fuse_bias_gelu(is_fastgelu=True)
self.fuse_bias_gelu(is_fastgelu=False)
if (options is None) or options.enable_bias_skip_layer_norm:
# Fuse SkipLayerNormalization and Add Bias before it.
self.fuse_add_bias_skip_layer_norm()
if (options is not None and options.enable_gelu_approximation):
self.gelu_approximation()
self.remove_unused_constant()
# Use symbolic batch dimension in input and output.
self.use_dynamic_axes()
logger.info(f"opset verion: {self.model.opset_import[0].version}")
def get_fused_operator_statistics(self):
"""
Returns node count of fused operators.
"""
op_count = {}
ops = [
'EmbedLayerNormalization', 'Attention', 'Gelu', 'FastGelu', 'BiasGelu', 'LayerNormalization',
'SkipLayerNormalization'
]
for op in ops:
nodes = self.get_nodes_by_op_type(op)
op_count[op] = len(nodes)
logger.info(f"Optimized operators:{op_count}")
return op_count
def is_fully_optimized(self):
"""
Returns True when the model is fully optimized.
"""
op_count = self.get_fused_operator_statistics()
embed = op_count['EmbedLayerNormalization']
attention = op_count['Attention']
gelu = op_count['Gelu'] + op_count['BiasGelu'] + op_count['FastGelu']
layer_norm = op_count['LayerNormalization'] + op_count['SkipLayerNormalization']
is_optimized = (embed > 0) and (attention > 0) and (attention == gelu) and (layer_norm >= 2 * attention)
logger.info(
f"EmbedLayer={embed}, Attention={attention}, Gelu={gelu}, LayerNormalization={layer_norm}, Successful={is_optimized}"
)
return is_optimized