ONNX Runtime: cross-platform, high performance ML inferencing and training accelerator
Find a file
Atanas Dimitrov 275eb404bf
Speedup CumSum for large arrays (#22048)
### Description
This PR refactors the `CPU` kernel for the `CumSum` operator. The new
implementation strives to have as little indirection as possible.


### Motivation and Context
Currently the `CumSum` operator perform very poorly in the case of 1D
tensors(it was slower than a python loop). This is caused by the
extensive use of the `SliceIterator`-s.

Here is a relevant snippet:
```python
import time
import ndonnx as ndx
import onnxruntime as ort
import numpy as np
import onnx

def test_cumsum(sz):
    a = ndx.array(shape=(sz,), dtype=ndx.int64)
    b = ndx.cumsum(a)
    model = ndx.build({'a': a}, {'b': b})
    onnx.save(model, "model.onnx")

    input = np.ones(sz, np.int64)
    start = time.time()
    result = ort.InferenceSession(model.SerializeToString()).run(None, {'a': input})
    end = time.time()
    return end - start

def test_cumsum_by_hand(sz):
    input = np.ones(sz, np.int64)
    start = time.time()
    answer = [0]
    for i in input:
        answer.append(answer[-1] + i)
    end = time.time()
    return end - start

print(test_cumsum(int(1e7))) 
print(test_cumsum_by_hand(int(1e7))) 
```

Before
```console
0.9794480800628662
0.4518160820007324
```

After
```console
0.02483987808227539
0.5496008396148682
```

The `model.onnx`: 
<img width="214" alt="image"
src="https://github.com/user-attachments/assets/a213d6ff-86c3-49b5-a493-ebfd97deaa41">

The flame graph:

![profile-3](https://github.com/user-attachments/assets/c7418a05-cb65-4d72-a76d-6a6b05b4ba4d)
2024-09-17 15:53:07 -07:00
.config
.devcontainer
.gdn
.github Create CMake option onnxruntime_USE_VCPKG (#21348) 2024-09-10 16:39:27 -07:00
.pipelines [DML EP] Update DML to 1.15.1 (#21695) 2024-08-12 14:16:43 -07:00
.vscode Stop VSCode appending file associations to settings.json (#21944) 2024-08-31 19:04:12 -07:00
cgmanifests Upgrade XNNPACK to latest version (#22012) 2024-09-17 10:12:16 -07:00
cmake Upgrade XNNPACK to latest version (#22012) 2024-09-17 10:12:16 -07:00
csharp Fix C# doc generation workflow (#21988) 2024-09-05 13:54:17 +10:00
dockerfiles [CUDA] Update Dockerfile.cuda with cuda 12.5.1 and cudnn 9 (#21987) 2024-09-05 15:25:40 -07:00
docs Matmul_nbits kernel for mlas sqnbits to support Fp16 inputs (#21807) 2024-09-13 14:55:08 -07:00
include/onnxruntime/core Update Arm Compute Library Execution Provider (#22032) 2024-09-12 20:51:59 -07:00
java [Java] Exposing SessionOptions.SetDeterministicCompute (#18998) 2024-09-16 11:55:38 +10:00
js Update pool to MacOS-13 (#17361) 2024-09-17 10:07:30 -07:00
objectivec Fix Objective-C static analysis warnings. (#20417) 2024-04-24 11:48:29 -07:00
onnxruntime Speedup CumSum for large arrays (#22048) 2024-09-17 15:53:07 -07:00
orttraining Move Gelu and LayerNorm fusion to L1 optimization (#21332) 2024-09-09 13:27:52 +10:00
rust Fix typos according to reviewdog report. (#21335) 2024-07-22 13:37:32 -07:00
samples
tools Upgrade XNNPACK to latest version (#22012) 2024-09-17 10:12:16 -07:00
winml Fix warnings (#21809) 2024-08-21 14:23:37 -07:00
.clang-format
.clang-tidy
.dockerignore
.gitattributes Fix typos according to reviewdog report. (#21335) 2024-07-22 13:37:32 -07:00
.gitignore
.gitmodules Revert "Upgrade emsdk from 3.1.59 to 3.1.62" (#21817) 2024-08-22 11:21:00 -07:00
.lintrunner.toml [js] change default formatter for JavaScript/TypeScript from clang-format to Prettier (#21728) 2024-08-14 16:51:22 -07:00
build.bat
build.sh
build_arm64x.bat
CITATION.cff
CODEOWNERS
CONTRIBUTING.md
lgtm.yml
LICENSE
NuGet.config Update C# test projects (#21631) 2024-09-05 08:21:23 +10:00
ort.wprp Fully dynamic ETW controlled logging for ORT and QNN logs (#20537) 2024-06-06 21:11:14 -07:00
ORT_icon_for_light_bg.png
packages.config [DML EP] Update DML to 1.15.1 (#21695) 2024-08-12 14:16:43 -07:00
pyproject.toml Ignore ruff rule N813 (#21477) 2024-07-24 17:48:22 -07:00
README.md
requirements-dev.txt
requirements-doc.txt
requirements-lintrunner.txt Update ruff and clang-format versions (#21479) 2024-07-24 11:50:11 -07:00
requirements-training.txt
requirements.txt Add compatibility for NumPy 2.0 (#21085) 2024-06-27 13:50:53 -07:00
SECURITY.md
setup.py Fix copying ORT dylib into wheel on macOS (#21931) 2024-09-03 11:08:25 +08:00
ThirdPartyNotices.txt Fix typos according to reviewdog report. (#21335) 2024-07-22 13:37:32 -07:00
VERSION_NUMBER bumps up version in main from 1.19 -> 1.20 (#21588) 2024-08-05 15:46:04 -07:00

ONNX Runtime is a cross-platform inference and training machine-learning accelerator.

ONNX Runtime inference can enable faster customer experiences and lower costs, supporting models from deep learning frameworks such as PyTorch and TensorFlow/Keras as well as classical machine learning libraries such as scikit-learn, LightGBM, XGBoost, etc. ONNX Runtime is compatible with different hardware, drivers, and operating systems, and provides optimal performance by leveraging hardware accelerators where applicable alongside graph optimizations and transforms. Learn more →

ONNX Runtime training can accelerate the model training time on multi-node NVIDIA GPUs for transformer models with a one-line addition for existing PyTorch training scripts. Learn more →

Get Started & Resources

Builtin Pipeline Status

System Inference Training
Windows Build Status
Build Status
Build Status
Linux Build Status
Build Status
Build Status
Build Status
Build Status
Build Status
Build Status
Build Status
Mac Build Status
Android Build Status
iOS Build Status
Web Build Status
Other Build Status

Third-party Pipeline Status

System Inference Training
Linux Build Status

Data/Telemetry

Windows distributions of this project may collect usage data and send it to Microsoft to help improve our products and services. See the privacy statement for more details.

Contributions and Feedback

We welcome contributions! Please see the contribution guidelines.

For feature requests or bug reports, please file a GitHub Issue.

For general discussion or questions, please use GitHub Discussions.

Code of Conduct

This project has adopted the Microsoft Open Source Code of Conduct. For more information see the Code of Conduct FAQ or contact opencode@microsoft.com with any additional questions or comments.

License

This project is licensed under the MIT License.