# ------------------------------------------------------------------------- # Copyright (c) Microsoft Corporation. All rights reserved. # Licensed under the MIT License. # -------------------------------------------------------------------------- # This script opens an existing model in onnx format and attempts to # move initializers from model.graph.initializer field to model.graph.sparse_initializer field # and convert them into ONNX COO flat index format. import argparse import logging import numpy as np import sys from typing import Tuple, List import onnx from onnx import ModelProto, SparseTensorProto, TensorProto, numpy_helper logger = logging.getLogger(__name__) real_types = set((np.float32, np.float64, np.double)) def parse_arguments(): parser = argparse.ArgumentParser() parser.add_argument('--input', required=True, type=str, help='input model path') parser.add_argument('--output', required=True, type=str, help='output model path') parser.add_argument('--exclude', required=False, type=str, help='semicolon separated list of initializer names to exclude') parser.add_argument('--tolerance', required=False, type=float, default=1e-6, help='FP absolute tolerance. If not given simple compare to 0') parser.add_argument('--sparsity_threshold', required=False, type=float, default=0.5, help='convert to sparse initializers if sparsity is at least this much') parser.add_argument('--verbose', required=False, action='store_true') parser.set_defaults(verbose=False) args = parser.parse_args() return args def setup_logging(verbose): # type: (bool) -> None log_handler = logging.StreamHandler(sys.stdout) if verbose: log_handler.setFormatter(logging.Formatter('[%(filename)s:%(lineno)s - %(funcName)20s()] %(message)s')) logging_level = logging.DEBUG else: log_handler.setFormatter(logging.Formatter('%(filename)20s: %(message)s')) logging_level = logging.INFO log_handler.setLevel(logging_level) logger.addHandler(log_handler) logger.setLevel(logging_level) def convert_tensor_to_sparse(tensor, tolerance): # type: (TensorProto) -> Tuple[SparseTensorProto, float] """ returns a tuple of sparse_tensor and sparsity level """ values = [] indicies = [] nnz_count = 0 tensor_data = numpy_helper.to_array(tensor).flatten() data_len = len(tensor_data) if tensor_data.dtype in real_types: for index in range(data_len): el = tensor_data[index] if abs(el) <= tolerance: values.append(el) indicies.append(index) nnz_count += 1 else: for index in range(data_len): el = tensor_data[index] if el == 0: values.append(el) indicies.append(index) nnz_count += 1 sparsity = float(1.) - float(nnz_count)/data_len logger.debug(f"initializer={tensor.name}, dtype={tensor_data.dtype}, \ len={data_len}, nnz={nnz_count}, sparsity={sparsity}") values_tensor = onnx.helper.make_tensor(tensor.name, tensor.data_type, [len(values)], np.array(values).astype(tensor_data.dtype)) indicies_tensor = onnx.helper.make_tensor(tensor.name + '_indicies', TensorProto.INT64, [len(indicies)], np.array(indicies).astype(np.int64)) sparse_tensor = onnx.helper.make_sparse_tensor(values_tensor, indicies_tensor, tensor.dims) return (sparse_tensor, sparsity) def convert_initializers(model, exclude_names, sparsity_threshold, tolerance): # type: (ModelProto, List[str], float) -> None graph = model.graph converted_sparse = [] remaining_initializers = [] for initializer in graph.initializer: if initializer.name in exclude_names: logger.info(f"initializer={initializer.name} was excluded") continue if initializer.data_type == TensorProto.BOOL: logger.info(f"initializer={initializer.name} contains bool, not converted") remaining_initializers.append(initializer) continue sparse_tensor, sparsity = convert_tensor_to_sparse(initializer, tolerance) if sparsity >= sparsity_threshold: logger.info(f"initializer={initializer.name} converted. sparsity={sparsity}") converted_sparse.append(sparse_tensor) else: remaining_initializers.append(initializer) logger.info(f"initializer={initializer.name} is not converted. sparsity={sparsity}") graph.sparse_initializer.extend(converted_sparse) del graph.initializer[:] graph.initializer.extend(remaining_initializers) def main(): args = parse_arguments() setup_logging(args.verbose) exclude_names = set() if args.exclude is None else set(args.exclude.split(';')) model = ModelProto() with open(args.input, "rb") as input_file: model.ParseFromString(input_file.read()) convert_initializers(model, exclude_names, args.sparsity_threshold, args.tolerance) with open(args.output, "wb") as output_file: s = model.SerializeToString() output_file.write(s) if __name__ == "__main__": main()