### Description
This change upgrades a lot of dependencies. There are 2 motivations of
doing this change:
- fix the security issue reported by dependabot (protobufjs Prototype
Pollution vulnerability -
https://github.com/advisories/GHSA-h755-8qp9-cq85)
- resolve the requirement of using ONNX IR_VERSION 9 (#16638)
This requires:
- upgrade protobufjs to v7.2.4
- upgrade library 'onnx-proto' to consume latest ONNX release (v1.14.0).
Problems:
- protobufjs v7.2.4 depends on long.js v5, which does not work well with
typescript (commonjs).
- onnx-proto depends on this fix with a new release of long.js
- long.js is in maintenance and it takes longer than expected to put in
new changes
Solutions:
- use a patch script in `preprepare` to copy type declarations to make
long.js work with typescript (commonjs)
- generate onnx protobuf JS/TS files and put them under
js/web/lib/onnxjs/ort-schema/protobuf folder - remove 'onnx-proto' from
dependency.
- apply fixes to generated onnx.d.ts
