diff --git a/cmake/CMakeLists.txt b/cmake/CMakeLists.txt
index c447093f9f..7a43d53c3e 100644
--- a/cmake/CMakeLists.txt
+++ b/cmake/CMakeLists.txt
@@ -1228,7 +1228,7 @@ function(onnxruntime_add_shared_library_module target_name)
   endif()
 
   onnxruntime_configure_target(${target_name})
-  if (onnxruntime_target_platform STREQUAL "x86" AND NOT onnxruntime_BUILD_WEBASSEMBLY)
+  if (MSVC AND onnxruntime_target_platform STREQUAL "x86" AND NOT onnxruntime_BUILD_WEBASSEMBLY)
     target_link_options(${target_name} PRIVATE /SAFESEH)
   endif()
 endfunction()
@@ -1236,7 +1236,7 @@ endfunction()
 function(onnxruntime_add_executable target_name)
   add_executable(${target_name} ${ARGN})
   onnxruntime_configure_target(${target_name})
-  if (onnxruntime_target_platform STREQUAL "x86" AND NOT onnxruntime_BUILD_WEBASSEMBLY)
+  if (MSVC AND onnxruntime_target_platform STREQUAL "x86" AND NOT onnxruntime_BUILD_WEBASSEMBLY)
     target_link_options(${target_name} PRIVATE /SAFESEH)
   endif()
 endfunction()