diff --git a/cmake/external/onnxruntime_external_deps.cmake b/cmake/external/onnxruntime_external_deps.cmake
index 1e09145baa..46bec55ceb 100644
--- a/cmake/external/onnxruntime_external_deps.cmake
+++ b/cmake/external/onnxruntime_external_deps.cmake
@@ -119,7 +119,7 @@ onnxruntime_fetchcontent_makeavailable(utf8_range)
 include_directories(${utf8_range_SOURCE_DIR})
 
 # Download a protoc binary from Internet if needed
-if(NOT ONNX_CUSTOM_PROTOC_EXECUTABLE)
+if(NOT ONNX_CUSTOM_PROTOC_EXECUTABLE AND NOT onnxruntime_USE_VCPKG)
   # This part of code is only for users' convenience. The code couldn't handle all cases. Users always can manually
   # download protoc from Protobuf's Github release page and pass the local path to the ONNX_CUSTOM_PROTOC_EXECUTABLE
   # variable.
diff --git a/tools/ci_build/github/linux/build_tensorrt_ci.sh b/tools/ci_build/github/linux/build_tensorrt_ci.sh
index 86351da0ae..a2df99ab92 100755
--- a/tools/ci_build/github/linux/build_tensorrt_ci.sh
+++ b/tools/ci_build/github/linux/build_tensorrt_ci.sh
@@ -10,17 +10,17 @@ BUILD_ARGS=('--config' 'Release'
               '--parallel' '--use_vcpkg' '--use_binskim_compliant_compile_flags'
               '--build_wheel'
               '--enable_onnx_tests'
-          '--use_cuda'
-          "--cuda_version=$SHORT_CUDA_VERSION"
-          "--cuda_home=/usr/local/cuda-$SHORT_CUDA_VERSION"
-          "--cudnn_home=/usr/local/cuda-$SHORT_CUDA_VERSION"
-          "--use_tensorrt" "--tensorrt_home" "/usr"
+              '--use_cuda'
+              "--cuda_version=$SHORT_CUDA_VERSION"
+              "--cuda_home=/usr/local/cuda-$SHORT_CUDA_VERSION"
+              "--cudnn_home=/usr/local/cuda-$SHORT_CUDA_VERSION"
+              "--use_tensorrt" "--tensorrt_home" "/usr"
               "--enable_pybind"
-          "--build_java"
+              "--build_java"
               "--cmake_extra_defines"
-          "CMAKE_CUDA_ARCHITECTURES=75"
-          "onnxruntime_BUILD_UNIT_TESTS=ON"
-          "onnxruntime_ENABLE_CUDA_EP_INTERNAL_TESTS=ON")
+              "CMAKE_CUDA_ARCHITECTURES=75"
+              "onnxruntime_BUILD_UNIT_TESTS=ON"
+              "onnxruntime_ENABLE_CUDA_EP_INTERNAL_TESTS=ON")
 
 # Parse external args
 for arg in "$@"; do