diff --git a/tools/ci_build/github/linux/delete_unused_files_before_upload.sh b/tools/ci_build/github/linux/delete_unused_files_before_upload.sh
index 5d7d01e31f..7398bc025b 100755
--- a/tools/ci_build/github/linux/delete_unused_files_before_upload.sh
+++ b/tools/ci_build/github/linux/delete_unused_files_before_upload.sh
@@ -2,6 +2,7 @@
 set -e -x
 rm -rf $BUILD_BINARIESDIRECTORY/Release/onnxruntime $BUILD_BINARIESDIRECTORY/Release/pybind11
 rm -f $BUILD_BINARIESDIRECTORY/Release/models
+rm -rf $BUILD_BINARIESDIRECTORY/Release/vcpkg_installed
 find $BUILD_BINARIESDIRECTORY/Release/_deps -mindepth 1 ! -regex "^$BUILD_BINARIESDIRECTORY/Release/_deps/onnx-src\(/.*\)?" -delete
 cd $BUILD_BINARIESDIRECTORY/Release
 find -executable -type f > $BUILD_BINARIESDIRECTORY/Release/perms.txt
diff --git a/tools/ci_build/github/linux/run_build.sh b/tools/ci_build/github/linux/run_build.sh
index 25b3610872..db8c271e3c 100755
--- a/tools/ci_build/github/linux/run_build.sh
+++ b/tools/ci_build/github/linux/run_build.sh
@@ -37,7 +37,7 @@ if [ $BUILD_OS = "yocto" ]; then
 
     make -j$(nproc)
 else
-    COMMON_BUILD_ARGS="--skip_submodule_sync --enable_onnx_tests --parallel --use_binskim_compliant_compile_flags --cmake_path /usr/bin/cmake --ctest_path /usr/bin/ctest"
+    COMMON_BUILD_ARGS="--skip_submodule_sync --enable_onnx_tests --parallel --use_vcpkg --use_binskim_compliant_compile_flags --cmake_path /usr/bin/cmake --ctest_path /usr/bin/ctest"
 
     if [ $BUILD_DEVICE = "gpu" ]; then
         _CUDNN_VERSION=$(echo $CUDNN_VERSION | cut -d. -f1-2)
diff --git a/tools/ci_build/github/linux/run_dockerbuild.sh b/tools/ci_build/github/linux/run_dockerbuild.sh
index fa066022c7..df94a48c58 100755
--- a/tools/ci_build/github/linux/run_dockerbuild.sh
+++ b/tools/ci_build/github/linux/run_dockerbuild.sh
@@ -117,7 +117,7 @@ if [ $BUILD_DEVICE = "openvino" ] && [[ $BUILD_EXTR_PAR == *"--use_openvino GPU_
 fi
 # Though this command has a yocto version argument, none of our ci build pipelines use yocto.
 $DOCKER_CMD run $RUNTIME --rm $DOCKER_RUN_PARAMETER \
-    -e NIGHTLY_BUILD \
+    -e NIGHTLY_BUILD -e SYSTEM_COLLECTIONURI \
     -e $ALLOW_RELEASED_ONNX_OPSET_ONLY_ENV \
     "onnxruntime-$IMAGE" \
     /bin/bash /onnxruntime_src/tools/ci_build/github/linux/run_build.sh \